Browse Element(s) Details


Os.16961.1.S1_at

Description gb:AK058667.1
DB_XREF= gi:32968685
TID=Os.16961.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16961 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-G11, full insert sequence.
FL= gb:AK058667.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1143011/11GRAM domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11400Os.14423.1.S1_at11/116+6006464..6009098expressed protein
LOC_Os06g11400Os.14423.1.S1_x_at9/116+6006464..6009098expressed protein
LOC_Os06g11410Os.14184.1.S1_at11/116+6018598..6020854Cyclin, C-terminal domain containing protein, expressed
LOC_Os06g11420OsAffx.15370.1.S1_at11/116+6026824..6028446SKIP/SNW domain containing protein
LOC_Os06g11430Os.16961.1.S1_at11/116+6031432..6034427GRAM domain-containing protein, putative, expressed
LOC_Os06g11430OsAffx.27566.1.S1_at4/116+6031432..6034427GRAM domain-containing protein, putative, expressed
LOC_Os06g11440Os.7473.1.S1_at11/116+6035702..6049763transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g11440Os.49361.1.S1_at11/116+6035702..6049763transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g11450Os.55651.1.S1_at11/116+6057842..6059542Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16961.1.S1_at--44--8511Chr06:6033860..6033884 (25 bp)
TGGATAAACAGGTGGTCATTCCTCT
LOC_Os06g11430
Os.16961.1.S1_at--1040--2651Chr06:6034025..6034049 (25 bp)
AAGCCATGAATAGTGCCCGCGAGAT
LOC_Os06g11430
Os.16961.1.S1_at--558--9171Chr06:6034038..6034062 (25 bp)
TGCCCGCGAGATGCAACCGTAGATA
LOC_Os06g11430
Os.16961.1.S1_at--1030--1451Chr06:6034070..6034094 (25 bp)
AGAAGTTTCAGTCGAGAGTCATCCT
LOC_Os06g11430
Os.16961.1.S1_at--76--1171Chr06:6034086..6034110 (25 bp)
AGTCATCCTGATCCTGTGTAGCAAT
LOC_Os06g11430
Os.16961.1.S1_at--875--8271Chr06:6034119..6034143 (25 bp)
GGCATCTCTATTTCCGCGATCGATT
LOC_Os06g11430
Os.16961.1.S1_at--724--8891Chr06:6034154..6034178 (25 bp)
TGAGTGTCTCCTGTTTCAGATCCTT
LOC_Os06g11430
Os.16961.1.S1_at--927--1871Chr06:6034208..6034232 (25 bp)
ACGATACACTCACTAGCTTCTATAC
LOC_Os06g11430
Os.16961.1.S1_at--557--6731Chr06:6034246..6034270 (25 bp)
GTTCTTTTTGTTGTGGCCTTCCGCG
LOC_Os06g11430
Os.16961.1.S1_at--498--8451Chr06:6034259..6034283 (25 bp)
TGGCCTTCCGCGTGTTGTAATGATG
LOC_Os06g11430
Os.16961.1.S1_at--963--5891Chr06:6034304..6034328 (25 bp)
GAGCTGTCCATTTTGAATGCTTTTA
LOC_Os06g11430
Target Sequence 
TGGATAAACAGGTGGTCATTCCTCTGCACCAGCTAAGANGCGGCTAATCCTTCAGTGAGCNAANGTAAACCCTGCTGAAA
AGTATATTCAGGTTGTTTCAGTTGAAGGCCACGAGTTCTGGTTCATGGGTTTTCTGATGTATGACAAAGCCGTGTNGTAG
CCTCCAAGAAGCCATGAATAGTGCCCGCGAGATGCAACCGTAGATACCAAAGCAGAAGTTTCAGTCGAGAGTCATCCTGA
TCCTGTGTAGCAATCCTGGGGGGGCATCTCTATTTCCGCGATCGATTCCTTCGCTTCTGAGTGTCTCCTGTTTCAGATCC
TTCGCGGNTGTGTGCTTCNGAGCCATTTGAGACGATACACTCACTAGCTTCTATACGTGTTCGAAATGTGTTCTTTTTGT
TGTGGCCTTCCGCGTGTTGTAATGATGGGATGTATGGGAAAACACTGGAGCTGTCCATTTTGAATGCTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis