Browse Element(s) Details


Os.7473.1.S1_at

Description gb:CF313824
DB_XREF= gi:33685585
DB_XREF=HD--02-B23.b1
CLONE=HD--02-B23
TID=Os.7473.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7473 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1144011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11410Os.14184.1.S1_at11/116+6018598..6020854Cyclin, C-terminal domain containing protein, expressed
LOC_Os06g11420OsAffx.15370.1.S1_at11/116+6026824..6028446SKIP/SNW domain containing protein
LOC_Os06g11430Os.16961.1.S1_at11/116+6031432..6034427GRAM domain-containing protein, putative, expressed
LOC_Os06g11430OsAffx.27566.1.S1_at4/116+6031432..6034427GRAM domain-containing protein, putative, expressed
LOC_Os06g11440Os.7473.1.S1_at11/116+6035702..6049763transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g11440Os.49361.1.S1_at11/116+6035702..6049763transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g11450Os.55651.1.S1_at11/116+6057842..6059542Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g11460NANA6+6065748..6070866retrotransposon protein, putative, unclassified
LOC_Os06g11470NANA6+6073936..6074916hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7473.1.S1_at--77--1091Chr06:6036087..6036111 (25 bp)
AGGGCAGAAGATTGCTCGTTCCATT
LOC_Os06g11440
Os.7473.1.S1_at--457--5351Chr06:6036081..6036105 (25 bp)
GAAGATTGCTCGTTCCATTGGAAGA
LOC_Os06g11440
Os.7473.1.S1_at--516--8991Chr06:6036040..6036064 (25 bp)
TGAATTTTGATTCCCATTACAGTCG
LOC_Os06g11440
Os.7473.1.S1_at--543--10651Chr06:6036030..6036054 (25 bp)
TTCCCATTACAGTCGAATCACAAGC
LOC_Os06g11440
Os.7473.1.S1_at--66--6071Chr06:6035999..6036023 (25 bp)
GAGTTTTATTTTGTAATGCTCCAAT
LOC_Os06g11440
Os.7473.1.S1_at--850--7871Chr06:6035950..6035974 (25 bp)
GGTTTCAATTCCTAGTTTTTGCTGT
LOC_Os06g11440
Os.7473.1.S1_at--1135--7631Chr06:6035885..6035909 (25 bp)
GGGAGGATAGCTACAACCAGCAGAA
LOC_Os06g11440
Os.7473.1.S1_at--819--5031Chr06:6035866..6035890 (25 bp)
GCAGAAAGTGACTTTTTCCTACGCC
LOC_Os06g11440
Os.7473.1.S1_at--918--4771Chr06:6035838..6035862 (25 bp)
GCTGCGTGGAGTGTTGTCTTGTAAA
LOC_Os06g11440
Os.7473.1.S1_at--143--5951Chr06:6035796..6035820 (25 bp)
GAGTAGGTCTTCATGGAGGCCTAAA
LOC_Os06g11440
Os.7473.1.S1_at--262--851Chr06:6035758..6035782 (25 bp)
ATGGCCCACATATTGAATGTTACGT
LOC_Os06g11440
Target Sequence 
AGGGCAGAAGATTGCTCGTTCCATTGGAAGAGATACTCATANTAGTTTGAATTTTGATTCCCATTACAGTCGAATCACAA
GCTGTNCGGAGTTTTATTTTGTAATGCTCCAATAATGGGAGAACAATGGGGATGCTAGGTTTCAATTCCTAGTTTTTGCT
GTGTTTTTTGTTTTTACCAGCATATAATTTGGGTGCTTAATAGGGAGGATAGCTACAACCAGCAGAAAGTGACTTTTTCC
TACGCCCGTGCTGCGTGGAGTGTTGTCTTGTAAATTNATGCTGTCATGTAGGAGTAGGTCTTCATGGAGGCCTAAAAACT
CAGCNAAAAATGGCCCACATATTGAATGTTACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis