Browse Element(s) Details


Os.14184.1.S1_at

Description gb:AK103765.1
DB_XREF= gi:32988974
TID=Os.14184.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14184 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033143H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033143H11, full insert sequence.
FL= gb:AK103765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1141011/11Cyclin, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11390OsAffx.15368.1.S1_at11/116+6002867..6003975hypothetical protein
LOC_Os06g11400Os.14423.1.S1_at11/116+6006464..6009098expressed protein
LOC_Os06g11400Os.14423.1.S1_x_at9/116+6006464..6009098expressed protein
LOC_Os06g11410Os.14184.1.S1_at11/116+6018598..6020854Cyclin, C-terminal domain containing protein, expressed
LOC_Os06g11420OsAffx.15370.1.S1_at11/116+6026824..6028446SKIP/SNW domain containing protein
LOC_Os06g11430Os.16961.1.S1_at11/116+6031432..6034427GRAM domain-containing protein, putative, expressed
LOC_Os06g11430OsAffx.27566.1.S1_at4/116+6031432..6034427GRAM domain-containing protein, putative, expressed
LOC_Os06g11440Os.7473.1.S1_at11/116+6035702..6049763transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g11440Os.49361.1.S1_at11/116+6035702..6049763transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000080biological_processG1 phase of mitotic cell cycle
GO:0009744biological_processresponse to sucrose stimulus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14184.1.S1_at--458--10331Chr06:6020126..6020150 (25 bp)
TTTCAGACCATCAGAGATCGCGGCC
LOC_Os06g11410
Os.14184.1.S1_at--810--531Chr06:6020142..6020166 (25 bp)
ATCGCGGCCAGTGTAGCTCTAGTAG
LOC_Os06g11410
Os.14184.1.S1_at--85--6031Chr06:6020196..6020220 (25 bp)
GAGAGGGTGGCAACTTGTTACAAAA
LOC_Os06g11410
Os.14184.1.S1_at--687--2511Chr06:6020461..6020485 (25 bp)
AACATTATGCGCCAATCAGCCGGCT
LOC_Os06g11410
Os.14184.1.S1_at--653--2431Chr06:6020503..6020527 (25 bp)
AAAAGCCCCATAGGTGTATTGGATG
LOC_Os06g11410
Os.14184.1.S1_at--391--8891Chr06:6020553..6020577 (25 bp)
TGAGGACACTTTTGTTGGATCACCT
LOC_Os06g11410
Os.14184.1.S1_at--1049--10711Chr06:6020622..6020646 (25 bp)
TTGCAGATGATTGTTTTCGTTGTAC
LOC_Os06g11410
Os.14184.1.S1_at--1150--10611Chr06:6020637..6020661 (25 bp)
TTCGTTGTACATTTGTAGCCTTCAA
LOC_Os06g11410
Os.14184.1.S1_at--412--9991Chr06:6020652..6020676 (25 bp)
TAGCCTTCAAGTATGTTGCTCACCC
LOC_Os06g11410
Os.14184.1.S1_at--1047--451Chr06:6020736..6020760 (25 bp)
ATCTCTTGTTATTTCGCATTCATGC
LOC_Os06g11410
Os.14184.1.S1_at--406--4951Chr06:6020751..6020775 (25 bp)
GCATTCATGCTTCCATATTCATTTT
LOC_Os06g11410
Target Sequence 
TTTCAGACCATCAGAGATCGCGGCCAGTGTAGCTCTAGTAGCATTGGAGGAACATGAAACTTCCATGTTTGAGAGGGTGG
CAACTTGTTACAAAAATTTAAAGAAGGAGAGGGTNATTACGGTGCTATGAAATGATTCNAGATAAGNATTATTATGAGNA
ACATTATGCGCCAATCAGCCGGCTCCGTTTTCTCCATTCCNAAAAGCCCCATAGGTGTATTGGATGNCAGCTGCATGTAT
AAGCCAACNAAGTGAGGACACTTTTGTTGGATCACCTGCNACNAATTATGAGAGCTCGGCGTCAAGCAAAAGGAGGAGAA
TTTGCAGATGATTGTTTTCGTTGTACATTTGTAGCCTTCAAGTATGTTGCTCACCCANTTTGTTTTAATGGACCCNAGAA
CANTGGTCATTAGGACAGGTTTTTGTAGAGACGAGCNATCTCTTGTTATTTCGCATTCATGCTTCCATATTCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis