Browse Element(s) Details


Os.55720.1.S1_at

Description gb:AK108652.1
DB_XREF= gi:32993861
TID=Os.55720.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55720 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-C10, full insert sequence.
FL= gb:AK108652.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5669011/11Auxin responsive protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56654Os.5973.1.S1_at11/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56654OsAffx.26639.1.S1_at10/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56670Os.15267.1.S1_at11/114+33565295..33567400U3 small nucleolar ribonucleoprotein protein IMP3, putative, expressed
LOC_Os04g56680Os.55358.1.S1_at11/114+33570364..33571315Auxin responsive protein, expressed
LOC_Os04g56690Os.55720.1.S1_at11/114+33585356..33586405Auxin responsive protein, expressed
LOC_Os04g56700OsAffx.14440.1.S1_at10/114+33590548..33593234Naringenin,2-oxoglutarate 3-dioxygenase, putative
LOC_Os04g56710Os.21764.1.S1_at11/114+33595092..33599676GTP cyclohydrolase I family protein, expressed
LOC_Os04g56720Os.18550.1.S1_at11/114+33603380..33609512Regulator of chromosome condensation family protein, expressed
LOC_Os04g56730Os.4682.1.S1_a_at11/114+33609877..33613506Repressor of RNA polymerase III transcription MAF1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55720.1.S1_at--10--10511Chr04:33585809..33585833 (25 bp)
TTCAAGGGATGGACAGCCTCGTCTG
LOC_Os04g56690
Os.55720.1.S1_at--1123--6951Chr04:33585758..33585782 (25 bp)
GTACCTAAGCCACCGATAAGCAAAA
LOC_Os04g56690
Os.55720.1.S1_at--822--2431Chr04:33585737..33585761 (25 bp)
AAAAGCAGCTGCAAACCGTGCACGC
LOC_Os04g56690
Os.55720.1.S1_at--743--491Chr04:33585697..33585721 (25 bp)
ATCGGCGGCATTGCAGCTGGTCGTT
LOC_Os04g56690
Os.55720.1.S1_at--186--3991Chr04:33585618..33585642 (25 bp)
CGGGCACATGCAAGAACGCGCGCTG
LOC_Os04g56690
Os.55720.1.S1_at--756--8271Chr04:33585592..33585616 (25 bp)
GGCATGCATGCGACGTCTAAAGGGC
LOC_Os04g56690
Os.55720.1.S1_at--159--3491Chr04:33585525..33585549 (25 bp)
CAGGCGGCCGGCACACAGTACTGTA
LOC_Os04g56690
Os.55720.1.S1_at--655--4871Chr04:33585470..33585494 (25 bp)
GCTATAGCTATCTGCCATGGGCTGA
LOC_Os04g56690
Os.55720.1.S1_at--389--8651Chr04:33585453..33585477 (25 bp)
TGGGCTGACAGCTACTACAAGATAT
LOC_Os04g56690
Os.55720.1.S1_at--522--6531Chr04:33585402..33585426 (25 bp)
GATTTTAGGTATTCTTCTCCCTGTA
LOC_Os04g56690
Os.55720.1.S1_at--673--10591Chr04:33585388..33585412 (25 bp)
TTCTCCCTGTAATTCTACTCGGAAA
LOC_Os04g56690
Target Sequence 
TTCAAGGGATGGACAGCCTCGTCTGGTGATCCGCGCCAATCCGAAAGCCTCGTACCTAAGCCACCGATAAGCAAAAGCAG
CTGCAAACCGTGCACGCGCGTCCATGTCGTCGATCGGCGGCATTGCAGCTGGTCGTTCGGGCGCGCGTGGCGACCGCGGG
ACAAGAAGGCCGTGCACGACACGTACGCACGCGGGCACATGCAAGAACGCGCGCTGGGGCATGCATGCGACGTCTAAAGG
GCGCCCTCCCGTGCTCGGCGTAATGGCGGCGCGCGCAACTGGGGCAGGCGGCCGGCACACAGTACTGTAGCTAGCTAAGC
TAGCTAGCATAGCAAGTAGGCTATAGCTATCTGCCATGGGCTGACAGCTACTACAAGATATACTAATCTGATTGAGAGGG
TGGTGATGATTTTAGGTATTCTTCTCCCTGTAATTCTACTCGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis