Browse Element(s) Details


Os.55762.1.S1_at

Description gb:AK108755.1
DB_XREF= gi:32993964
TID=Os.55762.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55762 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-F11, full insert sequence.
FL= gb:AK108755.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0871011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08670Os.51447.1.S1_s_at11/111+4314803..4315582expressed protein
LOC_Os01g08680Os.34739.1.S1_a_at11/111+4319529..4323144expressed protein
LOC_Os01g08680Os.34739.2.S1_at1/111+4319529..4323144expressed protein
LOC_Os01g08690OsAffx.10970.1.S1_at9/111+4323380..4325632holocarboxylase synthetase, putative, expressed
LOC_Os01g08700Os.7987.1.S1_at11/111+4326162..4335288GIGANTEA protein, putative, expressed
LOC_Os01g08710Os.55762.1.S1_at11/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710Os.30505.1.S1_at10/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_x_at9/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_at8/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08720NANA1+4354526..4357857transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08730Os.47463.1.S1_x_at6/111+4359930..4363629transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08730Os.14491.2.S1_x_at5/111+4359930..4363629transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08740OsAffx.10971.1.S1_at2/111+4365540..4366067hypothetical protein
LOC_Os01g08750OsAffx.10972.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.25107.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.2.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.505.1.S1_x_at11/111+4370952..4390222expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55762.1.S1_at--1013--6271Chr01:4344272..4344296 (25 bp)
GATGACCTTCATCTGGTAGCTTGCT
LOC_Os01g08710
Os.55762.1.S1_at--669--10531Chr01:4344265..4344289 (25 bp)
TTCATCTGGTAGCTTGCTTCCTCTA
LOC_Os01g08710
Os.55762.1.S1_at--645--4091Chr01:4344195..4344219 (25 bp)
CGACTCCGATCCACAAGCTGATGAT
LOC_Os01g08710
Os.55762.1.S1_at--739--6431Chr01:4344173..4344197 (25 bp)
GATCAGCTAGCTGGTCATATATCCA
LOC_Os01g08710
Os.55762.1.S1_at--912--7811Chr01:4344161..4344185 (25 bp)
GGTCATATATCCATCGACGACTGCA
LOC_Os01g08710
Os.55762.1.S1_at--339--5791Chr01:4344146..4344170 (25 bp)
GACGACTGCATTTCGATATCACATG
LOC_Os01g08710
Os.55762.1.S1_at--849--10191Chr01:4344102..4344126 (25 bp)
TATTACTATTTGCTGTTACTGTTGT
LOC_Os01g08710
Os.55762.1.S1_at--737--8771Chr01:4344089..4344113 (25 bp)
TGTTACTGTTGTTTAATTTGTCACC
LOC_Os01g08710
Os.55762.1.S1_at--82--10251Chr01:4344073..4344097 (25 bp)
TTTGTCACCGTTATCATAGTTATGT
LOC_Os01g08710
Os.55762.1.S1_at--986--6771Chr01:4344042..4344066 (25 bp)
GTTAGGCTGGTGATAATTACTTATA
LOC_Os01g08710
Os.55762.1.S1_at--45--9991Chr01:4344015..4344039 (25 bp)
TAGCGCTTGTTGTACGTAGCCGAGT
LOC_Os01g08710
Target Sequence 
GATGACCTTCATCTGGTAGCTTGCTTCCTCTACCTAGCTCTCCCGTCGTCGTCGTCGTCGTCGTCCTTCGCCTTCTCCGA
CTCCGATCCACAAGCTGATGATCAGCTAGCTGGTCATATATCCATCGACGACTGCATTTCGATATCACATGCTTGTGTGT
GTATTATTATTATTACTATTTGCTGTTACTGTTGTTTAATTTGTCACCGTTATCATAGTTATGTTAGTTAGTTAGGCTGG
TGATAATTACTTATATATAGCGCTTGTTGTACGTAGCCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis