Browse Element(s) Details


Os.55783.1.S1_at

Description gb:AK109707.1
DB_XREF= gi:32994916
TID=Os.55783.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-G07, full insert sequence.
FL= gb:AK109707.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1004011/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09980OsAffx.26161.1.S1_at10/1111+5345729..5347368hypothetical protein
LOC_Os11g09990Os.22922.1.S1_at11/1111+5353178..5354840mTERF family protein, expressed
LOC_Os11g09990OsAffx.30913.1.S1_at1/1111+5353178..5354840mTERF family protein, expressed
LOC_Os11g10000Os.51881.1.S1_at10/1111+5358656..5360424mTERF family protein, expressed
LOC_Os11g10010OsAffx.18774.1.S1_at11/1111+5362883..5363562hypothetical protein
LOC_Os11g10020OsAffx.7056.1.S1_at11/1111+5364123..5365737hypothetical protein
LOC_Os11g10030OsAffx.18775.1.S1_at11/1111+5366696..5366920hypothetical protein
LOC_Os11g10040Os.24789.1.A1_at11/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10040Os.55783.1.S1_at11/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10040Os.55783.2.S1_x_at10/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10050Os.11635.1.S1_at11/1111+5373891..5379346G-protein alpha subunit, putative, expressed
LOC_Os11g10060Os.9834.1.S1_a_at9/1111+5394814..5403685SEU3A protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55783.1.S1_at--369--6471Chr11:5370832..5370856 (25 bp)
GATAAATATGATAGCAAGTTCCTTG
LOC_Os11g10040
Os.55783.1.S1_at--465--271Chr11:5370837..5370861 (25 bp)
ATATGATAGCAAGTTCCTTGATCAA
LOC_Os11g10040
Os.55783.1.S1_at--290--1971Chr11:5370909..5370933 (25 bp)
ACTGTTGTGGTGAAATGATGTTCCT
LOC_Os11g10040
Os.55783.1.S1_at--882--6271Chr11:5370925..5370949 (25 bp)
GATGTTCCTGTATTTTTCTCCCCAT
LOC_Os11g10040
Os.55783.1.S1_at--1123--8791Chr11:5370927..5370951 (25 bp)
TGTTCCTGTATTTTTCTCCCCATTA
LOC_Os11g10040
Os.55783.1.S1_at--56--10671Chr11:5370929..5370953 (25 bp)
TTCCTGTATTTTTCTCCCCATTATC
LOC_Os11g10040
Os.55783.1.S1_at--861--4271Chr11:5370931..5370955 (25 bp)
CCTGTATTTTTCTCCCCATTATCTG
LOC_Os11g10040
Os.55783.1.S1_at--519--10211Chr11:5370935..5370959 (25 bp)
TATTTTTCTCCCCATTATCTGATAA
LOC_Os11g10040
Os.55783.1.S1_at--977--171Chr11:5370936..5370960 (25 bp)
ATTTTTCTCCCCATTATCTGATAAG
LOC_Os11g10040
Os.55783.1.S1_at--1152--10371Chr11:5370938..5370962 (25 bp)
TTTTCTCCCCATTATCTGATAAGTA
LOC_Os11g10040
Os.55783.1.S1_at--1033--9491Chr11:5370941..5370965 (25 bp)
TCTCCCCATTATCTGATAAGTAAAG
LOC_Os11g10040
Target Sequence 
GATAAATATGATAGCAAGTTCCTTGATCAAGAAAAGAAAAACAACAAGAAGAAAGCAAGTTGGGGGGCCATGCATCAACT
GTTGTGGTGAAATGATGTTCCTGTATTTTTCTCCCCATTATCTGATAAGTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis