Browse Element(s) Details


Os.55785.1.S1_at

Description gb:AK108797.1
DB_XREF= gi:32994006
TID=Os.55785.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55785 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-C03, full insert sequence.
FL= gb:AK108797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3161011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31560OsAffx.28701.2.S1_at11/117+18738691..18739715hypothetical protein
LOC_Os07g31570NANA7+18741704..18742150hypothetical protein
LOC_Os07g31590NANA7+18753563..18757440retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g31600Os.18191.2.S1_at1/117+18759606..18760064hypothetical protein
LOC_Os07g31610Os.55785.1.S1_at11/117+18763979..18765446Peroxidase family protein, expressed
LOC_Os07g31620NANA7+18770816..18772855transposon protein, putative, Pong sub-class
LOC_Os07g31630NANA7+18777631..18782781retrotransposon protein, putative, unclassified
LOC_Os07g31640Os.28943.1.S1_x_at4/117+18783405..18786627retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55785.1.S1_at--944--5711Chr07:18765000..18765024 (25 bp)
GACGGCGGGTACGTCTACCTCGACG
LOC_Os07g31610
Os.55785.1.S1_at--970--4211Chr07:18765025..18765049 (25 bp)
CCGACACGCCGACGGAGTTCGACAA
LOC_Os07g31610
Os.55785.1.S1_at--430--9851Chr07:18765057..18765081 (25 bp)
TACAAGAACCTGCTGCGCGACATGG
LOC_Os07g31610
Os.55785.1.S1_at--982--791Chr07:18765078..18765102 (25 bp)
ATGGGCCTCCTGGAGACGGACCAGA
LOC_Os07g31610
Os.55785.1.S1_at--146--8851Chr07:18765166..18765190 (25 bp)
TGATCAGGCACCAGTTCGCCGACTC
LOC_Os07g31610
Os.55785.1.S1_at--290--2491Chr07:18765264..18765288 (25 bp)
AACAGCAACTCCTACTGATTGATTG
LOC_Os07g31610
Os.55785.1.S1_at--16--451Chr07:18765337..18765361 (25 bp)
ATCTATTATCAATTGCTTATGCGAG
LOC_Os07g31610
Os.55785.1.S1_at--492--611Chr07:18765355..18765379 (25 bp)
ATGCGAGTAATGTCAATGGTTTTCC
LOC_Os07g31610
Os.55785.1.S1_at--231--831Chr07:18765370..18765394 (25 bp)
ATGGTTTTCCATTTTGGCTTCTTGG
LOC_Os07g31610
Os.55785.1.S1_at--18--10251Chr07:18765382..18765406 (25 bp)
TTTGGCTTCTTGGTAATTTCCTCAA
LOC_Os07g31610
Os.55785.1.S1_at--128--2451Chr07:18765414..18765438 (25 bp)
AAAATGCTTGTGTTTTGGAGCTTAA
LOC_Os07g31610
Target Sequence 
GACGGCGGGTACGTCTACCTCGACGCCGACACGCCGACGGAGTTCGACAACGGCTACTACAAGAACCTGCTGCGCGACAT
GGGCCTCCTGGAGACGGACCAGAAGCTGCTGCCGGACTCGAGGACGGGGGAGTTCGTCAGGGAGCTCGCCGGCGCGCGCC
CGGAGCTGATCAGGCACCAGTTCGCCGACTCCATGCGCCGCCTCGGCGCCGCGCAGGTGCTCACCGGCGACGAAGGCGAG
GTCCGCCTCAAGTGCTCCGCCATCAACAGCAACTCCTACTGATTGATTGATCTGATTAGCATATATGTCAATATATCGAA
TTATATTATCGATCGATATCTATTATCAATTGCTTATGCGAGTAATGTCAATGGTTTTCCATTTTGGCTTCTTGGTAATT
TCCTCAAGAGAAAAAAAATGCTTGTGTTTTGGAGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis