Browse Element(s) Details


Os.55829.1.S1_at

Description gb:AK108862.1
DB_XREF= gi:32994071
TID=Os.55829.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-B10, full insert sequence.
FL= gb:AK108862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3076011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30740OsAffx.14892.1.S1_at10/115+17721901..17722776C2 domain containing protein, expressed
LOC_Os05g30750Os.14652.1.S1_at11/115+17730985..17735251C2 domain-containing protein, putative, expressed
LOC_Os05g30760Os.55829.1.S1_at11/115+17740235..17746288hydrolase, alpha/beta fold family protein, expressed
LOC_Os05g30770NANA5+17753209..17755917hypothetical protein
LOC_Os05g30780NANA5+17761005..17761819Esterase PIR7B, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55829.1.S1_at--174--1231Chr05:17742263..17742287 (25 bp)
AGTTCTTCCTTGACTCGATGGAGCT
LOC_Os05g30760
Os.55829.1.S1_at--816--5311Chr05:17742211..17742235 (25 bp)
GAACCCTGTAATCTTCGGGCCCAAT
LOC_Os05g30760
Os.55829.1.S1_at--263--2251Chr05:17742176..17742200 (25 bp)
AAATACTTTACCATCTAAGCCCACA
LOC_Os05g30760
Os.55829.1.S1_at--448--10271Chr05:17740677..17740701 (25 bp)
TTTGACCTTAGGACTATCGCTGATC
LOC_Os05g30760
Os.55829.1.S1_at--28--8851Chr05:17740657..17740681 (25 bp)
TGATCCGGCCGACGAACAAGTTCAC
LOC_Os05g30760
Os.55829.1.S1_at--969--691Chr05:17740619..17740643 (25 bp)
ATGAGGGACCCTGGGCTCCTGACGA
LOC_Os05g30760
Os.55829.1.S1_at--378--4951Chr05:17740516..17740540 (25 bp)
GCATGATCGCGGAGAACCCCGGCGT
LOC_Os05g30760
Os.55829.1.S1_at--904--4791Chr05:17740434..17740458 (25 bp)
GCTCGCCGAGTTGCTTGTTAGGATC
LOC_Os05g30760
Os.55829.1.S1_at--185--6791Chr05:17740418..17740442 (25 bp)
GTTAGGATCGCCGACAAAGCACACG
LOC_Os05g30760
Os.55829.1.S1_at--369--2351Chr05:17740403..17740427 (25 bp)
AAAGCACACGAACCATGAGTCCATG
LOC_Os05g30760
Os.55829.1.S1_at--13--7631Chr05:17740362..17740386 (25 bp)
GGGACAGCCAAATCACTGATCAATA
LOC_Os05g30760
Target Sequence 
AGTTCTTCCTTGACTCGATGGAGCTGGAGCAGCAGAACGCTGACATCCCGGGGAACCCTGTAATCTTCGGGCCCAATTTT
ATGGCCCAAATACTTTACCATCTAAGCCCACAAGAGGATTTGACCTTAGGACTATCGCTGATCCGGCCGACGAACAAGTT
CACCGGCGACGCGCTCATGAGGGACCCTGGGCTCCTGACGAAGGAGAGGTACGGGTCGACGAGGCGCGTCTTCGTCGTCG
TGGAGGACGACCGCGGGATCCCCGTGGAGTTCCAGCGCCGCATGATCGCGGAGAACCCCGGCGTCGAGGTGGTGGACTTC
GCCGGCGCCGACCACATGGCCATGATCTCCAGCCCGGCCAAGCTCGCCGAGTTGCTTGTTAGGATCGCCGACAAAGCACA
CGAACCATGAGTCCATGACTCGGACTAGGAGTGGGGACAGCCAAATCACTGATCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis