Browse Element(s) Details


Os.14652.1.S1_at

Description gb:AK102476.1
DB_XREF= gi:32987685
TID=Os.14652.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14652 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094I04, full insert sequence.
FL= gb:AK058522.1 gb:AK102476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3075011/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30720OsAffx.25435.1.S1_at2/115+17707057..17710121transposon protein, putative, unclassified
LOC_Os05g30730Os.53022.1.S1_at11/115+17712555..17713985expressed protein
LOC_Os05g30740OsAffx.14892.1.S1_at10/115+17721901..17722776C2 domain containing protein, expressed
LOC_Os05g30750Os.14652.1.S1_at11/115+17730985..17735251C2 domain-containing protein, putative, expressed
LOC_Os05g30760Os.55829.1.S1_at11/115+17740235..17746288hydrolase, alpha/beta fold family protein, expressed
LOC_Os05g30770NANA5+17753209..17755917hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004791molecular_functionthioredoxin-disulfide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14652.1.S1_at--46--731Chr05:17734739..17734763 (25 bp)
ATGTTGTAAGCTCGACTGCCTCATG
LOC_Os05g30750
Os.14652.1.S1_at--827--631Chr05:17734761..17734785 (25 bp)
ATGCTATGCTATCGAGCTGCCCAGG
LOC_Os05g30750
Os.14652.1.S1_at--586--5431Chr05:17734889..17734913 (25 bp)
GAACCTTTCATGTAACTGCTGAACG
LOC_Os05g30750
Os.14652.1.S1_at--824--5591Chr05:17734951..17734975 (25 bp)
GAAATTTGTTCGTGGTCATCACCTG
LOC_Os05g30750
Os.14652.1.S1_at--224--9611Chr05:17734966..17734990 (25 bp)
TCATCACCTGTCATCGGGAGGCTTA
LOC_Os05g30750
Os.14652.1.S1_at--956--8291Chr05:17734985..17735009 (25 bp)
GGCTTACTGGGCATGTCATCTCATA
LOC_Os05g30750
Os.14652.1.S1_at--14--3171Chr05:17735027..17735051 (25 bp)
AATTCCATCAGATATGTGCCCCTGA
LOC_Os05g30750
Os.14652.1.S1_at--831--7411Chr05:17735109..17735133 (25 bp)
GTGTTAATCTGTGCTCGGCAATTCT
LOC_Os05g30750
Os.14652.1.S1_at--723--911Chr05:17735140..17735164 (25 bp)
AGGCATTAACCCTGACCAATCTGTG
LOC_Os05g30750
Os.14652.1.S1_at--443--8471Chr05:17735163..17735187 (25 bp)
TGGCCCATCCTGTTGAGTGATCTGT
LOC_Os05g30750
Os.14652.1.S1_at--239--4751Chr05:17735203..17735227 (25 bp)
GCTGATTGCCTTGGAGCCTGAACAA
LOC_Os05g30750
Target Sequence 
ATGTTGTAAGCTCGACTGCCTCATGCTATGCTATCGAGCTGCCCAGGCGATGGCTGCAATGCATAAGAAATTGGAGAAAC
CTGAACTCTTATCTATTCTCTTTTTTGTAGTCTATCAGTTGCATGGTTATGTATGTCTTCAGGTGGTTTTGAACCTTTCA
TGTAACTGCTGAACGCATTATGTGACTGGATTTGCATGTATGGTGCGTGCGGGAAATTTGTTCGTGGTCATCACCTGTCA
TCGGGAGGCTTACTGGGCATGTCATCTCATACATATTGCATTCTGTATAATTCCATCAGATATGTGCCCCTGAATTTAGG
CTAGTTGTGTTAAGGATGATGACTGACATTTGGGCTGCAGGAAGAAATTTNGTGTTAATCTGTGCTCGGCAATTCTAAGT
GCAGGCATTAACCCTGACCAATCTGTGGCCCATCCTGTTGAGTGATCTGTTGTTTTGTGATTTGTGCTGATTGCCTTGGA
GCCTGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis