Browse Element(s) Details


Os.5588.1.S1_s_at

Description gb:AU031675
DB_XREF= gi:3767648
DB_XREF=AU031675
CLONE=R0461_6Z
TID=Os.5588.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.5588 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T51839 (A.thaliana) T51839 sulfate transport protein (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0998011/11Sulfate transporter 1.2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09970Os.19822.1.S1_at11/113+4966994..4971526Sulfate transporter 1.2, putative, expressed
LOC_Os03g09980Os.5588.1.S1_s_at11/113+4977513..4981290Sulfate transporter 1.2, putative, expressed
LOC_Os03g09990NANA3+4982389..4984083retrotransposon protein, putative, unclassified
LOC_Os03g10000NANA3+4984783..4987921retrotransposon protein, putative, unclassified
LOC_Os03g10010OsAffx.25030.1.S1_at11/113+4993464..4993784hypothetical protein
LOC_Os03g10010OsAffx.25030.1.S1_x_at11/113+4993464..4993784hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008272biological_processsulfate transport
GO:0005886cellular_componentplasma membrane
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5588.1.S1_s_at--528--8211Chr03:4980617..4980641 (25 bp)
GGAATCCATGCCTTCAAAGAGTTGT
LOC_Os03g09980
Os.5588.1.S1_s_at--422--951Chr03:4980644..4980668 (25 bp)
AGGACACTTGAAAAGCGCCAGATTC
LOC_Os03g09980
Os.5588.1.S1_s_at--1048--4411Chr03:4980660..4980793 (25 bp)
GCCAGATTCAGCTGATTTTCGCCAA
LOC_Os03g09980
Os.5588.1.S1_s_at--1134--4691Chr03:4980801..4980825 (25 bp)
GCGGCTGTGATCCAAAAGCTCCGGT
LOC_Os03g09980
Os.5588.1.S1_s_at--496--2691Chr03:4980816..4980840 (25 bp)
AAGCTCCGGTCAGCAAAATTCACAG
LOC_Os03g09980
Os.5588.1.S1_s_at--968--591Chr03:4980863..4980887 (25 bp)
ATGCCTGACAGTTGGTGACGCCGTA
LOC_Os03g09980
Os.5588.1.S1_s_at--71--2351Chr03:4980887..4980911 (25 bp)
AAAGAAATTTGCTCCCCAGTTGACT
LOC_Os03g09980
Os.5588.1.S1_s_at--201--7431Chr03:4980981..4981005 (25 bp)
GTGTTAGCAAGTGCACTTTCATAGT
LOC_Os03g09980
Os.5588.1.S1_s_at--554--3071Chr03:4981053..4981077 (25 bp)
AATAAAGTAGTGTGCTGGACCTGAA
LOC_Os03g09980
Os.5588.1.S1_s_at--442--5411Chr03:4981075..4981099 (25 bp)
GAAGCCCACCAGATTTGCCAGGTGT
LOC_Os03g09980
Os.5588.1.S1_s_at--520--791Chr03:4981146..4981170 (25 bp)
ATGGGTATATCAGTGCATGCAACAG
LOC_Os03g09980
Target Sequence 
GGAATCCATGCCTTCAAAGAGTTGTTGAGGACACTTGAAAAGCGCCAGATTCAGCTGATTTTCGCCAATCCTGGGGCGGC
TGTGATCCAAAAGCTCCGGTCAGCAAAATTCACAGAGCTCATTGGTGAAGAAAAGATATGCCTGACAGTTGGTGACGCCG
TAAAGAAATTTGCTCCCCAGTTGACTGAGAATGTCTGAACTCTGAAGAAGGTGCAACAAGTTATATTCAAGAGGTGTCAT
TCTTTTAGAAACTCAGTGTTAGCAAGTGCACTTTCATAGTGCAAAGCGGCACTGGAGTAAATAACGTAGTTGGGGAGGGA
GATGGTAAATAAAGTAGTGTGCTGGACCTGAAGCCCACCAGATTTGCCAGGTGTAGTTGGGGAAAAGAACATATGCAGAG
AAGCATAGTTGGGTATGTAAATGGGTATATCAGTGCATGCAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5588.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis