Browse Element(s) Details


Os.55911.1.S1_at

Description gb:AY305865.1
DB_XREF= gi:32172479
GEN=ZFP16
TID=Os.55911.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55911 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP16 (ZFP16) mRNA, complete cds.
PROD=C2H2 type zinc finger transcription factorZFP16
FL= gb:AY305865.1 gb:AK108981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0239011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02350OsAffx.14502.1.S1_at11/115+737050..741830Endonuclease/Exonuclease/phosphatase family protein
LOC_Os05g02360OsAffx.14503.1.S1_at11/115+749242..749484hypothetical protein
LOC_Os05g02370NANA5+751337..751648hypothetical protein
LOC_Os05g02380OsAffx.4235.1.S1_at10/115+755555..757894hypothetical protein
LOC_Os05g02380Os.53712.1.S1_x_at1/115+755555..757894hypothetical protein
LOC_Os05g02390Os.55911.1.S1_at11/115+761238..762121Zinc finger, C2H2 type family protein, expressed
LOC_Os05g02400OsAffx.4236.1.S1_at10/115+766883..769735RNA recognition motif family protein, expressed
LOC_Os05g02410Os.10942.2.S1_x_at11/115+769915..772696expressed protein
LOC_Os05g02410OsAffx.26693.1.S1_at1/115+769915..772696expressed protein
LOC_Os05g02420Os.17902.1.S1_at11/115+779253..781382expressed protein
LOC_Os05g02420OsAffx.5031.3.S1_x_at1/115+779253..781382expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
GO:0009409biological_processresponse to cold
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009631biological_processcold acclimation
GO:0009643biological_processphotosynthetic acclimation
GO:0010200biological_processresponse to chitin
GO:0042538biological_processhyperosmotic salinity response
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55911.1.S1_at--338--4951Chr05:761974..761998 (25 bp)
GCATTCGAGGACAGCGATATGGCGC
LOC_Os05g02390
Os.55911.1.S1_at--853--271Chr05:761958..761982 (25 bp)
ATATGGCGCGCGTGCTGATGCTCAT
LOC_Os05g02390
Os.55911.1.S1_at--919--8851Chr05:761943..761967 (25 bp)
TGATGCTCATGTCGTCGCACGGGCA
LOC_Os05g02390
Os.55911.1.S1_at--426--9631Chr05:761937..761961 (25 bp)
TCATGTCGTCGCACGGGCAGCAGGA
LOC_Os05g02390
Os.55911.1.S1_at--546--9471Chr05:761700..761724 (25 bp)
TCTGCGGCCTCGAGTTCGCCATTGG
LOC_Os05g02390
Os.55911.1.S1_at--38--10651Chr05:761686..761710 (25 bp)
TTCGCCATTGGCCAGGCTCTCGGCG
LOC_Os05g02390
Os.55911.1.S1_at--113--4531Chr05:761624..761648 (25 bp)
GCCGCGGGCGATCGTCGTCGACAAG
LOC_Os05g02390
Os.55911.1.S1_at--172--1711Chr05:761439..761463 (25 bp)
ACCAGTTCTTGGATACCGGAGCCAT
LOC_Os05g02390
Os.55911.1.S1_at--505--311Chr05:761427..761451 (25 bp)
ATACCGGAGCCATGGCCGTTGACTG
LOC_Os05g02390
Os.55911.1.S1_at--696--4031Chr05:761411..761435 (25 bp)
CGTTGACTGCGTCGGCTACTAGCTC
LOC_Os05g02390
Os.55911.1.S1_at--601--3931Chr05:761399..761423 (25 bp)
CGGCTACTAGCTCTCTTTGCCGGAT
LOC_Os05g02390
Target Sequence 
GCATTCGAGGACAGCGATATGGCGCGCGTGCTGATGCTCATGTCGTCGCACGGGCAGCAGGAGCAGGCGCTGGCTCTGCC
GGTGCCGGTGCAGCTGCCGCTCGCCGCCGCGCGCGGCGACCGCGCCCCGGAGCGCGCGTTNGTCTGCAAGACGTGCAACC
GCGTGTTCCCGTCGTTCCAGGCGCTCGGCGGCCACCGNGCCAGCCACAAGAAGCCGAGGCTCGACGGCGACGGCGACNTC
TCCCTGTCCAAGCCCANGCTCCACGGCTGCTCCATCTGCGGCCTCGAGTTCGCCATTGGCCAGGCTCTCGGCGGCCACAT
GAGGCGCCACCGCGCCATGACCGGCGGCATGCCGCGGGCGATCGTCGTCGACAAGAAGCCCGACGTCGTCGACGTCCACG
TCCACGGCCACGACGACGACGGCGGCATCAAGCGCGGCGGCCTGTGGCTCGACCTGAACCATCCACCCTGCGACGACGCC
GGCGACGACGACGNCGAGTGCGGCCACAATGCCGCCGGCGCCGGCATCACGTTCCACCAGTTCTTGGATACCGGAGCCAT
GGCCGTTGACTGCGTCGGCTACTAGCTCTCTTTGCCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis