Browse Element(s) Details


Os.56065.1.S1_s_at

Description gb:AK109198.1
DB_XREF= gi:32994407
TID=Os.56065.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-B11, full insert sequence.
FL= gb:AK109198.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3749011/11expressed protein
LOC_Os02g046701/11Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37440NANA11+21607131..21611404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g37460Os.50120.1.S1_at1/1111+21614659..21617988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37470OsAffx.19216.1.S1_at11/1111+21621434..21623485hypothetical protein
LOC_Os11g37480NANA11+21629583..21629801hypothetical protein
LOC_Os11g37490Os.56065.1.S1_s_at11/1111+21633112..21633876expressed protein
LOC_Os11g37500OsAffx.7327.1.S1_at11/1111+21634791..21635297hypothetical protein
LOC_Os11g37510Os.13975.1.S1_at11/1111+21638610..21642206ribosomal protein L4/L1 family protein, expressed
LOC_Os11g37520Os.6117.1.S1_at11/1111+21649398..21654156ETO1-like protein 1, putative, expressed
LOC_Os11g37530NANA11+21655234..21657383hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56065.1.S1_s_at--619--8371Chr11:21633578..21633602 (25 bp)
GGCGAAGACTCAGCGGAGGCTCTCC
LOC_Os11g37490
Os.56065.1.S1_s_at--385--5691Chr11:21633452..21633476 (25 bp)
GACTTCGGTGGTCTTCCAGAGGCTC
LOC_Os11g37490
Os.56065.1.S1_s_at--760--951Chr11:21633323..21633347 (25 bp)
AGGACGCCGCCTTCGTTTCTTGGAG
LOC_Os11g37490
Os.56065.1.S1_s_at--787--9391Chr11:21633311..21633335 (25 bp)
TCGTTTCTTGGAGCTTTGCTCTTGT
LOC_Os11g37490
Os.56065.1.S1_s_at--164--10291Chr11:21633297..21633321 (25 bp)
TTTGCTCTTGTGTTCATTGATCCCA
LOC_Os11g37490
Os.56065.1.S1_s_at--162--8591Chr11:21633256..21633280 (25 bp)
TGGTTTCTTTAGCTTGCCTCATCAA
LOC_Os11g37490
Os.56065.1.S1_s_at--350--372Chr02:2097276..2097298 (23 bp)
ATCAATCATCCCAAGATCTGAGCTT
LOC_Os02g04670
Os.56065.1.S1_s_at--574--6411Chr11:21633222..21633246 (25 bp)
GATCTGAGCTTGGTAGTAGTTCTCA
LOC_Os11g37490
Os.56065.1.S1_s_at--962--6931Chr11:21633207..21633231 (25 bp)
GTAGTTCTCATTGAAATCCACCTGA
LOC_Os11g37490
Os.56065.1.S1_s_at--426--1471Chr11:21633161..21633185 (25 bp)
AGAATGGGTTCTTCGGTGCTGGCAT
LOC_Os11g37490
Os.56065.1.S1_s_at--1105--5212Chr01:13116170..13116592 (25 bp)
GAATTTTGTGCTTTCTTGATTGTGA
NONE
Target Sequence 
GGCGAAGACTCAGCGGAGGCTCTCCCCTCCTCCCTTCGCTGGCTCTCCCCCCCCATCTTCGGCTCTCCCCTCATCCGGCG
GGAGCGGACGGCCTCACGCGCGCCTTCGGGAGCGGTCGGCGGCGGCGACTTCGGTGGTCTTCCAGAGGCTCGCCGGTGCC
TCCTCTCCCTCGATCTTGGCGTCGGCTCGCTGGCTGTTCTTGGCGGTGGGAGGCGAGGAGGACGCCACCTCCATCATCCA
TGGGGAGAGGCGAGGAGGACGCCGCCTTCGTTTCTTGGAGCTTTGCTCTTGTGTTCATTGATCCCAAAATCCCCCTTTTT
GCTGGTTTCTTTAGCTTGCCTCATCAATCATCCCAAGATCTGAGCTTGGTAGTAGTTCTCATTGAAATCCACCTGAAAAA
AAATCCCCAGATTTTGCAGAATGGGTTCTTCGGTGCTGGCATGGAAGGGCTGGGAAAGAGAAAGAATTTTGTGCTTTCTT
GATTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56065.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis