Browse Element(s) Details


Os.13975.1.S1_at

Description gb:AK069751.1
DB_XREF= gi:32979775
TID=Os.13975.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.13975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030I10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030I10, full insert sequence.
FL= gb:AK069751.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3751011/11ribosomal protein L4/L1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37460Os.50120.1.S1_at1/1111+21614659..21617988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37470OsAffx.19216.1.S1_at11/1111+21621434..21623485hypothetical protein
LOC_Os11g37480NANA11+21629583..21629801hypothetical protein
LOC_Os11g37490Os.56065.1.S1_s_at11/1111+21633112..21633876expressed protein
LOC_Os11g37500OsAffx.7327.1.S1_at11/1111+21634791..21635297hypothetical protein
LOC_Os11g37510Os.13975.1.S1_at11/1111+21638610..21642206ribosomal protein L4/L1 family protein, expressed
LOC_Os11g37520Os.6117.1.S1_at11/1111+21649398..21654156ETO1-like protein 1, putative, expressed
LOC_Os11g37530NANA11+21655234..21657383hypothetical protein
LOC_Os11g37540OsAffx.31345.1.S1_at11/1111+21666648..21672150Serine/threonine-protein kinase Doa, putative, expressed
LOC_Os11g37540Os.55756.1.S1_at11/1111+21666648..21672150Serine/threonine-protein kinase Doa, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0009547cellular_componentplastid ribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13975.1.S1_at--490--10411Chr11:21640748..21640772 (25 bp)
TTATCTGCTCGAACCGCTGAGGGAA
LOC_Os11g37510
Os.13975.1.S1_at--1--10791Chr11:21641560..21641584 (25 bp)
TTGATGACCTCGAAGTTCCTAGCCA
LOC_Os11g37510
Os.13975.1.S1_at--683--2511Chr11:21641595..21641619 (25 bp)
AACATTGTGCAGTACATTGGCCAGA
LOC_Os11g37510
Os.13975.1.S1_at--1030--1531Chr11:21641838..21641862 (25 bp)
AGCATCCTTCAACATGACACTCTTG
LOC_Os11g37510
Os.13975.1.S1_at--297--5631Chr11:21641853..21641877 (25 bp)
GACACTCTTGTAATGACGCGGAATG
LOC_Os11g37510
Os.13975.1.S1_at--294--5211Chr11:21641887..21641911 (25 bp)
GAATTGTTGAGCGTATGCACACCCC
LOC_Os11g37510
Os.13975.1.S1_at--423--4331Chr11:21641911..21641935 (25 bp)
CCATCAGCCGCTAGCATGTTGAGAT
LOC_Os11g37510
Os.13975.1.S1_at--461--10231Chr11:21641955..21641979 (25 bp)
TTTGTAGCAGATGTACTTCGACCCC
LOC_Os11g37510
Os.13975.1.S1_at--464--2711Chr11:21641983..21642007 (25 bp)
AAGCTTCATGCATGCCAGTTTTCAC
LOC_Os11g37510
Os.13975.1.S1_at--1039--7351Chr11:21642091..21642115 (25 bp)
GTGAACCATGTTGCGTCAGATCCAA
LOC_Os11g37510
Os.13975.1.S1_at--665--9151Chr11:21642152..21642176 (25 bp)
TGCGCTCATGACTCCAGATTTCTAA
LOC_Os11g37510
Target Sequence 
TTATCTGCTCGAACCGCTGAGGGAAAGCTCTTGGTCTTTGATGACCTCGAAGTTCCTAGCCACAAGACAAAAAACATTGT
GCAGTACATTGGCCAGATGGAAGGCACAAAGAAGGTTTTGTTGGTAGATGGAGGTGACATTGATAAGAAGTTAAAGCTGG
CTACCCAGAATCTTCACTATGTGAATGTTCTTCCATCCATTGGCCTAAATGTATACAGCATCCTTCAACATGACACTCTT
GTAATGACGCGGAATGCTATCAATAGAATTGTTGAGCGTATGCACACCCCCATCAGCCGCTAGCATGTTGAGATTCGACG
TGAACACCACTGTTTTGTAGCAGATGTACTTCGACCCCCTAAAGCTTCATGCATGCCAGTTTTCACTTTGCTGGTGTAAG
GCATTAGCAACAACACAATTTTCCTTTTCCTTTTTGAAAATGATCTATTTGCTTCTGCTAGTGATTTCAGTGAACCATGT
TGCGTCAGATCCAATACATCAAAGTAGGAAGTGAATTGGTCATCATNNNNNNNNNNNNGGTGTGCGCTCATGACTCCAGA
TTTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis