Browse Element(s) Details


Os.6117.1.S1_at

Description gb:AK070793.1
DB_XREF= gi:32980816
TID=Os.6117.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063K20, full insert sequence.
FL= gb:AK070793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3752011/11ETO1-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37480NANA11+21629583..21629801hypothetical protein
LOC_Os11g37490Os.56065.1.S1_s_at11/1111+21633112..21633876expressed protein
LOC_Os11g37500OsAffx.7327.1.S1_at11/1111+21634791..21635297hypothetical protein
LOC_Os11g37510Os.13975.1.S1_at11/1111+21638610..21642206ribosomal protein L4/L1 family protein, expressed
LOC_Os11g37520Os.6117.1.S1_at11/1111+21649398..21654156ETO1-like protein 1, putative, expressed
LOC_Os11g37530NANA11+21655234..21657383hypothetical protein
LOC_Os11g37540OsAffx.31345.1.S1_at11/1111+21666648..21672150Serine/threonine-protein kinase Doa, putative, expressed
LOC_Os11g37540Os.55756.1.S1_at11/1111+21666648..21672150Serine/threonine-protein kinase Doa, putative, expressed
LOC_Os11g37550OsAffx.31346.1.S1_at11/1111+21672153..21673433Calmodulin-2/3/5, putative
LOC_Os11g37560Os.53358.1.S1_at11/1111+21674169..21677560expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6117.1.S1_at--1006--6871Chr11:21653204..21653228 (25 bp)
GTATACCCCTACAGATACCGTGCTG
LOC_Os11g37520
Os.6117.1.S1_at--398--5191Chr11:21653652..21653676 (25 bp)
GCAATCGCCTTCAAGGCGGACCTGA
LOC_Os11g37520
Os.6117.1.S1_at--336--7511Chr11:21653760..21653784 (25 bp)
GTGGATCCTAACCACCAGGAGATGC
LOC_Os11g37520
Os.6117.1.S1_at--320--631Chr11:21653781..21653805 (25 bp)
ATGCTCGAGCTTCATCACCGGGTGA
LOC_Os11g37520
Os.6117.1.S1_at--256--7031Chr11:21653836..21653860 (25 bp)
GTACATACAGGAGCTCTACATAGCC
LOC_Os11g37520
Os.6117.1.S1_at--176--6811Chr11:21653880..21653904 (25 bp)
GTTTTGTACCATACACAGCAGATCA
LOC_Os11g37520
Os.6117.1.S1_at--849--6471Chr11:21653912..21653936 (25 bp)
GATAGTAGCCAATTTAGGCCCTCCA
LOC_Os11g37520
Os.6117.1.S1_at--334--3251Chr11:21653947..21653971 (25 bp)
CAACCCAATTCCTTGTGTCCTTAAT
LOC_Os11g37520
Os.6117.1.S1_at--535--731Chr11:21653978..21654002 (25 bp)
ATGTTGCTCATCATAGAGTCCTTTT
LOC_Os11g37520
Os.6117.1.S1_at--364--4171Chr11:21654074..21654098 (25 bp)
CCCATGTTCCCAACAAGTTTTGACT
LOC_Os11g37520
Os.6117.1.S1_at--242--3231Chr11:21654087..21654111 (25 bp)
CAAGTTTTGACTATCTCATGTGTAA
LOC_Os11g37520
Target Sequence 
GTATACCCCTACAGATACCGTGCTGCTGTGCTGATGGACAACCACAAAGAGAAGGAGGCCATCGCGGAGCTGACAAANGC
AATCGCCTTCAAGGCGGACCTGAACCTGCTCCACCTGCGAGCCGCCTTCCACGAGCANGTCGGCGACATCTNGAGTGCAC
TCCGGGACTGCCGCGCAGCGCTCTCCGTGGATCCTAACCACCAGGAGATGCTCGAGCTTCATCACCGGGTGAACNAGCCA
AGANCNCTGAGCCCCCCATTGTTGTACATACAGGAGCTCTACATAGCCAANCCATACCCCAAGTGTATGTTTTGTACCAT
ACACAGCAGATCAATGTAAGGATAGTAGCCAATTTAGGCCCTCCACCCCCAAAACCAACCCAATTCCTTGTGTCCTTAAT
TAGAATATGTTGCTCATCATAGAGTCCTTTTTTTAGTAAATTATTATATTTTTGTGATTAAGCCCCCCTCCTAATTGTAC
CCTCCATGTGCCCTCCCCCAACCCCATGTTCCCAACAAGTTTTGACTATCTCATGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis