Browse Element(s) Details


OsAffx.31346.1.S1_at

Description tigr:9639.m03398
TID=OsAffx.31346.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=134023 calmodulin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3755011/11Calmodulin-2/3/5, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37520Os.6117.1.S1_at11/1111+21649398..21654156ETO1-like protein 1, putative, expressed
LOC_Os11g37530NANA11+21655234..21657383hypothetical protein
LOC_Os11g37540OsAffx.31345.1.S1_at11/1111+21666648..21672150Serine/threonine-protein kinase Doa, putative, expressed
LOC_Os11g37540Os.55756.1.S1_at11/1111+21666648..21672150Serine/threonine-protein kinase Doa, putative, expressed
LOC_Os11g37550OsAffx.31346.1.S1_at11/1111+21672153..21673433Calmodulin-2/3/5, putative
LOC_Os11g37560Os.53358.1.S1_at11/1111+21674169..21677560expressed protein
LOC_Os11g37570OsAffx.19218.1.S1_at11/1111+21679829..21680233hypothetical protein
LOC_Os11g37580OsAffx.31347.2.S1_at11/1111+21685141..21686361hypothetical protein
LOC_Os11g37590NANA11+21688410..21691504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37600NANA11+21694010..21696875transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37610OsAffx.7328.3.S1_at9/1111+21698087..21701323hypothetical protein
LOC_Os11g37610OsAffx.7328.2.S1_at1/1111+21698087..21701323hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0009652biological_processthigmotropism
GO:0019722biological_processcalcium-mediated signaling
GO:0030163biological_processprotein catabolism
GO:0004871molecular_functionsignal transducer activity
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31346.1.S1_at--766--9291Chr11:21673372..21673396 (25 bp)
TCCGAGACGCCTTCTCGCTGTTCGA
LOC_Os11g37550
OsAffx.31346.1.S1_at--327--3551Chr11:21672982..21673006 (25 bp)
CATAAGTAGGGAGGAGCTGGCCACC
LOC_Os11g37550
OsAffx.31346.1.S1_at--166--8411Chr11:21672937..21672961 (25 bp)
GGCGCCAAGCCAGGAGGATCTGCAA
LOC_Os11g37550
OsAffx.31346.1.S1_at--127--5171Chr11:21672916..21672940 (25 bp)
GCAAGACATGATCGTGGCCGTCGAT
LOC_Os11g37550
OsAffx.31346.1.S1_at--222--4251Chr11:21672899..21672923 (25 bp)
CCGTCGATGAGGATGGCAATGGCAC
LOC_Os11g37550
OsAffx.31346.1.S1_at--206--8231Chr11:21672885..21672909 (25 bp)
GGCAATGGCACGATCGAGTTCGACG
LOC_Os11g37550
OsAffx.31346.1.S1_at--217--1871Chr11:21672863..21672887 (25 bp)
ACGAGTTCCTCGCAATAATGAAGAA
LOC_Os11g37550
OsAffx.31346.1.S1_at--468--4891Chr11:21672682..21672706 (25 bp)
GCTTTCAGGATTTTCGACAAGGATG
LOC_Os11g37550
OsAffx.31346.1.S1_at--111--2971Chr11:21672656..21672679 (24 bp)
AATGGATTCATATCACGCAATGAGT
LOC_Os11g37550
OsAffx.31346.1.S1_at--1005--2571Chr11:21672474..21672498 (25 bp)
AACGACGGGCAAGTTGATTACGAAG
LOC_Os11g37550
OsAffx.31346.1.S1_at--989--1211Chr11:21672449..21672473 (25 bp)
AGTTCAAGCGAGTCATGATGAGCAC
LOC_Os11g37550
Target Sequence 
TCCGAGACGCCTTCTCGCTGTTCGACAAGAACAATGACGGTTGCATAAGTAGGGAGGAGCTGGCCACCGTGCTCACACGC
CTGGGCATGGCGCCAAGCCAGGAGGATCTGCAAGACATGATCGTGGCCGTCGATGAGGATGGCAATGGCACGATCGAGTT
CGACGAGTTCCTCGCAATAATGAAGAAGAAACTATATGAGAATGACAAGGGTGATGATGAGGAAGAACTGAGGAAGGCTT
TCAGGATTTTCGACAAGGATGATAATGGATTCATATCACGCAATGAGTTAAGCATGGTGATGGCTAGTCTTGGAGAGGAG
ATGACAGAAGATGAGATTGATGATATGATGAAGGCAGCTGATAGCAACAACGACGGGCAAGTTGATTACGAAGAGTTCAA
GCGAGTCATGATGAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis