Browse Element(s) Details


OsAffx.7328.3.S1_at

Description tigr:9639.m03405
TID=OsAffx.7328.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g376109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37550OsAffx.31346.1.S1_at11/1111+21672153..21673433Calmodulin-2/3/5, putative
LOC_Os11g37560Os.53358.1.S1_at11/1111+21674169..21677560expressed protein
LOC_Os11g37570OsAffx.19218.1.S1_at11/1111+21679829..21680233hypothetical protein
LOC_Os11g37580OsAffx.31347.2.S1_at11/1111+21685141..21686361hypothetical protein
LOC_Os11g37590NANA11+21688410..21691504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37600NANA11+21694010..21696875transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37610OsAffx.7328.3.S1_at9/1111+21698087..21701323hypothetical protein
LOC_Os11g37610OsAffx.7328.2.S1_at1/1111+21698087..21701323hypothetical protein
LOC_Os11g37620OsAffx.31348.1.S1_at11/1111+21702411..21703353hypothetical protein
LOC_Os11g37630OsAffx.31349.1.S1_x_at11/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.31349.2.S1_x_at10/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.15454.1.S1_x_at1/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.15454.2.S1_x_at1/1111+21706956..21711324hypothetical protein
LOC_Os11g37640Os.11161.1.S1_at11/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640OsAffx.19219.1.S1_at10/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640Os.39305.1.A1_at1/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640Os.39305.1.A1_x_at1/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37650OsAffx.19220.1.S1_at9/1111+21720431..21725273hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7328.3.S1_at--803--6451Chr11:21699867..21699891 (25 bp)
GATAAGAAGCCCCTGTCAAAAGCTT
LOC_Os11g37610
OsAffx.7328.3.S1_at--575--4271NONE
CCTGTCAAAAGCTTGGGCCATGTTT
NONE
OsAffx.7328.3.S1_at--197--2716Chr11:14570034..14570053 (20 bp)
AAGCTTGGGCCATGTTTTTCATCGA
NONE
OsAffx.7328.3.S1_at--862--8012Chr07:18574388..18574412 (25 bp)
GGAGGAGACTCCAGGCACGGCAAAC
NONE
OsAffx.7328.3.S1_at--550--5992Chr07:18574392..18574416 (25 bp)
GAGACTCCAGGCACGGCAAACGCGT
NONE
OsAffx.7328.3.S1_at--197--2451Chr11:21698505..21698529 (25 bp)
AACACTGGGGCTATATTCAGGGTCC
LOC_Os11g37610
OsAffx.7328.3.S1_at--661--8051Chr11:21698475..21698499 (25 bp)
GGAGATGCTCTTATGTTCCATTTCT
LOC_Os11g37610
OsAffx.7328.3.S1_at--948--6691Chr11:21698464..21698485 (22 bp)
GTTCCATTTCTTCAGCAGGTATGCC
LOC_Os11g37610
OsAffx.7328.3.S1_at--764--191Chr11:21698425..21698480 (25 bp)
ATTTCTTCAGCAGGTATGCCATATA
LOC_Os11g37610
OsAffx.7328.3.S1_at--526--6911Chr11:21698176..21698200 (25 bp)
GTATGCCATATACATGTAGCGGTGT
LOC_Os11g37610
OsAffx.7328.3.S1_at--531--751Chr11:21698163..21698187 (25 bp)
ATGTAGCGGTGTATTCACTGGTGGA
LOC_Os11g37610
Target Sequence 
GATAAGAAGCCCCTGTCAAAAGCTTGGGCCATGTTTTTCATCGAGTTCAGGCGGAGGGTGCAGGCTGGAGGAGACTCCAG
GCACGGCAAACGCGTCGGCCGGGGAGGAGCGTCGGGCAGAGGAGGGCACCTGAAGGAGGACACGGTAGGCAGGGAGGAGC
CGCACCGGCCGGGGATGAGCACTGGGCAGGGGAAGTGCCGGCGGACCAAGACCACGTCAGGCGGCTCCCGCGCTTTTCCA
ACCGTGGATGGGGGCTGTGCAGTAGAGCCCCTGGGACTGTGGGGGCTTGGAAAGCCTCAACACTGGGGCTATATTCAGGG
TCCCTGCTGGAGATGCTCTTATGTTCCATTTCTTCAGCAGGTATGCCATATACATGTAGCGGTGTATTCACTGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7328.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis