Browse Element(s) Details


Os.11161.1.S1_at

Description gb:AK071632.1
DB_XREF= gi:32981655
TID=Os.11161.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11161 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104M08, full insert sequence.
FL= gb:AK058229.1 gb:AK071632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3764011/11ADP-ribosylation factor-like protein 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37590NANA11+21688410..21691504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37600NANA11+21694010..21696875transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37610OsAffx.7328.3.S1_at9/1111+21698087..21701323hypothetical protein
LOC_Os11g37610OsAffx.7328.2.S1_at1/1111+21698087..21701323hypothetical protein
LOC_Os11g37620OsAffx.31348.1.S1_at11/1111+21702411..21703353hypothetical protein
LOC_Os11g37630OsAffx.31349.1.S1_x_at11/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.31349.2.S1_x_at10/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.15454.1.S1_x_at1/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.15454.2.S1_x_at1/1111+21706956..21711324hypothetical protein
LOC_Os11g37640Os.11161.1.S1_at11/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640OsAffx.19219.1.S1_at10/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640Os.39305.1.A1_at1/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640Os.39305.1.A1_x_at1/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37650OsAffx.19220.1.S1_at9/1111+21720431..21725273hypothetical protein
LOC_Os11g37660OsAffx.7329.1.S1_at11/1111+21727528..21729717pentatricopeptide, putative, expressed
LOC_Os11g37670OsAffx.31350.1.S1_at11/1111+21740077..21743107expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11161.1.S1_at--149--3471Chr11:21717605..21717629 (25 bp)
CAGTGTTTATTTATGTCTCACATGT
LOC_Os11g37640
Os.11161.1.S1_at--41--2411Chr11:21717636..21717660 (25 bp)
AAAACCATGTCTGTATTCCCTACCA
LOC_Os11g37640
Os.11161.1.S1_at--41--7191Chr11:21717644..21717668 (25 bp)
GTCTGTATTCCCTACCAATCTGAAA
LOC_Os11g37640
Os.11161.1.S1_at--608--2251Chr11:21717680..21717704 (25 bp)
AAATTTGTGCGCAATCAACTACAAG
LOC_Os11g37640
Os.11161.1.S1_at--1021--4571Chr11:21717688..21717712 (25 bp)
GCGCAATCAACTACAAGTTGCTCCA
LOC_Os11g37640
Os.11161.1.S1_at--1096--331Chr11:21717739..21717763 (25 bp)
ATACACACATCATTTTCCTGTGCGC
LOC_Os11g37640
Os.11161.1.S1_at--414--2091Chr11:21717745..21717769 (25 bp)
ACATCATTTTCCTGTGCGCAATTCT
LOC_Os11g37640
Os.11161.1.S1_at--860--9571Chr11:21717748..21717772 (25 bp)
TCATTTTCCTGTGCGCAATTCTTGA
LOC_Os11g37640
Os.11161.1.S1_at--194--10671Chr11:21717753..21717777 (25 bp)
TTCCTGTGCGCAATTCTTGAAATTC
LOC_Os11g37640
Os.11161.1.S1_at--1153--7271Chr11:21717758..21717782 (25 bp)
GTGCGCAATTCTTGAAATTCAGAGT
LOC_Os11g37640
Os.11161.1.S1_at--322--2251Chr11:21717772..21717796 (25 bp)
AAATTCAGAGTTTTGATATTTCTGC
LOC_Os11g37640
Target Sequence 
CAGTGTTTATTTATGTCTCACATGTCTGAAAAAAACCATGTCTGTATTCCCTACCAATCTGAAATATAAAAGATCAAATT
TGTGCGCAATCAACTACAAGTTGCTCCATTTTTTTTCTCATATTCTCTGATGATATACACACATCATTTTCCTGTGCGCA
ATTCTTGAAATTCAGAGTTTTGATATTTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11161.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis