Browse Element(s) Details


OsAffx.19219.1.S1_at

Description tigr:9639.m03408
TID=OsAffx.19219.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY086337 ADP-ribosylation factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3764010/11ADP-ribosylation factor-like protein 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37590NANA11+21688410..21691504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37600NANA11+21694010..21696875transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37610OsAffx.7328.3.S1_at9/1111+21698087..21701323hypothetical protein
LOC_Os11g37610OsAffx.7328.2.S1_at1/1111+21698087..21701323hypothetical protein
LOC_Os11g37620OsAffx.31348.1.S1_at11/1111+21702411..21703353hypothetical protein
LOC_Os11g37630OsAffx.31349.1.S1_x_at11/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.31349.2.S1_x_at10/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.15454.1.S1_x_at1/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.15454.2.S1_x_at1/1111+21706956..21711324hypothetical protein
LOC_Os11g37640Os.11161.1.S1_at11/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640OsAffx.19219.1.S1_at10/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640Os.39305.1.A1_at1/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640Os.39305.1.A1_x_at1/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37650OsAffx.19220.1.S1_at9/1111+21720431..21725273hypothetical protein
LOC_Os11g37660OsAffx.7329.1.S1_at11/1111+21727528..21729717pentatricopeptide, putative, expressed
LOC_Os11g37670OsAffx.31350.1.S1_at11/1111+21740077..21743107expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19219.1.S1_at--848--7731Chr11:21715007..21715179 (25 bp)
GGTGGTTGCGGCACAATCATACGCT
LOC_Os11g37640
OsAffx.19219.1.S1_at--401--2231Chr11:21715019..21715191 (25 bp)
ACAATCATACGCTGGGTGCCTCAGA
LOC_Os11g37640
OsAffx.19219.1.S1_at--428--7711Chr11:21715180..21715204 (25 bp)
GGGTGCCTCAGATCAAGATATGTTT
LOC_Os11g37640
OsAffx.19219.1.S1_at--607--9711Chr11:21715204..21715228 (25 bp)
TCAACGTTTGTTTCTCAATTCCCAC
LOC_Os11g37640
OsAffx.19219.1.S1_at--894--3151Chr11:21715220..21715244 (25 bp)
AATTCCCACCTTTCGATTTCCTGAG
LOC_Os11g37640
OsAffx.19219.1.S1_at--641--171NONE
ATTTCCTGAGGAGATTCGGTGAGTT
NONE
OsAffx.19219.1.S1_at--433--7351Chr11:21716598..21716622 (25 bp)
GTGAACCAACACAGGAAGCTATCGA
LOC_Os11g37640
OsAffx.19219.1.S1_at--384--4871Chr11:21716615..21716639 (25 bp)
GCTATCGAAATGTATCCCTTTGCTT
LOC_Os11g37640
OsAffx.19219.1.S1_at--1085--6871Chr11:21716626..21716650 (25 bp)
GTATCCCTTTGCTTTAAGAGTTTGC
LOC_Os11g37640
OsAffx.19219.1.S1_at--275--3531Chr11:21716650..21716674 (25 bp)
CATGCTATTGTTGATACCTTTCGGC
LOC_Os11g37640
OsAffx.19219.1.S1_at--652--9971Chr11:21716664..21717173 (25 bp)
TACCTTTCGGCTTTGTGTGGGATTT
LOC_Os11g37640
Target Sequence 
GGTGGTTGCGGCACAATCATACGCTGGGTGCCTCAGATCAAGATATGTTTCAACGTTTGTTTCTCAATTCCCACCTTTCG
ATTTCCTGAGGAGATTCGGTGAGTTTAGTAACCAGTTGAGTGAACCAACACAGGAAGCTATCGAAATGTATCCCTTTGCT
TTAAGAGTTTGCATGCTATTGTTGATACCTTTCGGCTTTGTGTGGGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis