Browse Element(s) Details


OsAffx.31348.1.S1_at

Description tigr:9639.m03406
TID=OsAffx.31348.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3762011/11hypothetical protein
LOC_Os04g296201/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37560Os.53358.1.S1_at11/1111+21674169..21677560expressed protein
LOC_Os11g37570OsAffx.19218.1.S1_at11/1111+21679829..21680233hypothetical protein
LOC_Os11g37580OsAffx.31347.2.S1_at11/1111+21685141..21686361hypothetical protein
LOC_Os11g37590NANA11+21688410..21691504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37600NANA11+21694010..21696875transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37610OsAffx.7328.3.S1_at9/1111+21698087..21701323hypothetical protein
LOC_Os11g37610OsAffx.7328.2.S1_at1/1111+21698087..21701323hypothetical protein
LOC_Os11g37620OsAffx.31348.1.S1_at11/1111+21702411..21703353hypothetical protein
LOC_Os11g37630OsAffx.31349.1.S1_x_at11/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.31349.2.S1_x_at10/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.15454.1.S1_x_at1/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.15454.2.S1_x_at1/1111+21706956..21711324hypothetical protein
LOC_Os11g37640Os.11161.1.S1_at11/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640OsAffx.19219.1.S1_at10/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640Os.39305.1.A1_at1/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640Os.39305.1.A1_x_at1/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37650OsAffx.19220.1.S1_at9/1111+21720431..21725273hypothetical protein
LOC_Os11g37660OsAffx.7329.1.S1_at11/1111+21727528..21729717pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31348.1.S1_at--521--2311Chr11:21702785..21702808 (24 bp)
AAAGGAGCTGCAAGCACTTCCTCTC
LOC_Os11g37620
OsAffx.31348.1.S1_at--662--2293Chr04:17431840..17431868 (23 bp)
AAATGTTGCATCATCTCAAGGAGCT
LOC_Os04g29620
OsAffx.31348.1.S1_at--739--5891Chr11:21702710..21702734 (25 bp)
GAGCTGGCAGCCGTAGCCGGTATAC
LOC_Os11g37620
OsAffx.31348.1.S1_at--909--1671Chr11:21702696..21702720 (25 bp)
AGCCGGTATACACATGATCCTCATC
LOC_Os11g37620
OsAffx.31348.1.S1_at--626--5071Chr11:21702646..21702670 (25 bp)
GCAGCCGCAACGTATTATTCACCGT
LOC_Os11g37620
OsAffx.31348.1.S1_at--268--10211Chr11:21702634..21702658 (25 bp)
TATTATTCACCGTTTCCAACAGCCT
LOC_Os11g37620
OsAffx.31348.1.S1_at--1044--6631Chr11:21702579..21702603 (25 bp)
GTTGTACATATGTCTCTCGGTCATG
LOC_Os11g37620
OsAffx.31348.1.S1_at--124--631Chr11:21702557..21702581 (25 bp)
ATGCTGTTCTACCTGTTTGGCTCCA
LOC_Os11g37620
OsAffx.31348.1.S1_at--1002--8591Chr11:21702505..21702529 (25 bp)
TGGTCGGTTGGGTCATGGCCCTCAT
LOC_Os11g37620
OsAffx.31348.1.S1_at--788--4311Chr11:21702460..21702484 (25 bp)
CCTTCATCTTTCCATATAGCTTTCG
LOC_Os11g37620
OsAffx.31348.1.S1_at--1032--291Chr11:21702445..21702469 (25 bp)
ATAGCTTTCGCTACATCGCTGACAA
LOC_Os11g37620
Target Sequence 
AAAGGAGCTGCAAGCACTTCCTCTCTGGCAGCACTTCCTCATCTCAAGGAGTTGCAAATGTTGCATCATCTCAAGGAGCT
GGCAGCCGTAGCCGGTATACACATGATCCTCATCTACCTCTGCCGCTTTCTCCTCCGCCGCAGCCGCAACGTATTATTCA
CCGTTTCCAACAGCCTCCGTTTTCGCCTCAAGGTATTAACTGTATTGTTGTACATATGTCTCTCGGTCATGCTGTTCTAC
CTGTTTGGCTCCATCATGCCGCTGCCGCCGTGGGGCCTCGTGGTCGGTTGGGTCATGGCCCTCATCGCCGTCGAGCTCGC
CTACGCCTTCATCTTTCCATATAGCTTTCGCTACATCGCTGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis