Browse Element(s) Details


OsAffx.19218.1.S1_at

Description tigr:9639.m03400
TID=OsAffx.19218.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3757011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37530NANA11+21655234..21657383hypothetical protein
LOC_Os11g37540OsAffx.31345.1.S1_at11/1111+21666648..21672150Serine/threonine-protein kinase Doa, putative, expressed
LOC_Os11g37540Os.55756.1.S1_at11/1111+21666648..21672150Serine/threonine-protein kinase Doa, putative, expressed
LOC_Os11g37550OsAffx.31346.1.S1_at11/1111+21672153..21673433Calmodulin-2/3/5, putative
LOC_Os11g37560Os.53358.1.S1_at11/1111+21674169..21677560expressed protein
LOC_Os11g37570OsAffx.19218.1.S1_at11/1111+21679829..21680233hypothetical protein
LOC_Os11g37580OsAffx.31347.2.S1_at11/1111+21685141..21686361hypothetical protein
LOC_Os11g37590NANA11+21688410..21691504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37600NANA11+21694010..21696875transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37610OsAffx.7328.3.S1_at9/1111+21698087..21701323hypothetical protein
LOC_Os11g37610OsAffx.7328.2.S1_at1/1111+21698087..21701323hypothetical protein
LOC_Os11g37620OsAffx.31348.1.S1_at11/1111+21702411..21703353hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19218.1.S1_at--759--9611Chr11:21680178..21680202 (25 bp)
TCATCGCCGTCCATATTGCGATTGT
LOC_Os11g37570
OsAffx.19218.1.S1_at--445--231Chr11:21680166..21680190 (25 bp)
ATATTGCGATTGTCATCTCCTGCCC
LOC_Os11g37570
OsAffx.19218.1.S1_at--800--1991Chr11:21680135..21680159 (25 bp)
ACTCGCGGCCGTTGCATTAGTCGAC
LOC_Os11g37570
OsAffx.19218.1.S1_at--23--8431Chr11:21680129..21680153 (25 bp)
GGCCGTTGCATTAGTCGACGTGCCC
LOC_Os11g37570
OsAffx.19218.1.S1_at--76--9611Chr11:21680076..21680100 (25 bp)
TCATACGCCGCGGTGTGATCATCGT
LOC_Os11g37570
OsAffx.19218.1.S1_at--656--4671Chr11:21680067..21680091 (25 bp)
GCGGTGTGATCATCGTCTCCGGCGC
LOC_Os11g37570
OsAffx.19218.1.S1_at--1006--7971Chr11:21680003..21680027 (25 bp)
GGCAGCCATGGCGATCATCTACATG
LOC_Os11g37570
OsAffx.19218.1.S1_at--183--451Chr11:21679987..21680011 (25 bp)
ATCTACATGGCCATGTCGACCCTCT
LOC_Os11g37570
OsAffx.19218.1.S1_at--427--71Chr11:21679951..21679975 (25 bp)
ATTGCTCCTCTCACGCCATGGTGGG
LOC_Os11g37570
OsAffx.19218.1.S1_at--1094--4471Chr11:21679915..21679939 (25 bp)
GCCTGGGTCATGATCCTGCTCATCG
LOC_Os11g37570
OsAffx.19218.1.S1_at--50--4231Chr11:21679859..21679883 (25 bp)
CCGCTGCTGCTTCAACGAAACCGAA
LOC_Os11g37570
Target Sequence 
TCATCGCCGTCCATATTGCGATTGTCATCTCCTGCCCGGAGCCACTCGCGGCCGTTGCATTAGTCGACGTGCCCCTCCTC
TACCTCTGCCGCTACCTCCTCATCATACGCCGCGGTGTGATCATCGTCTCCGGCGCCGGCGCCGGCGGCGGCAGGTTGCG
CCGCTTCCGCCTCGGGGCAGCCATGGCGATCATCTACATGGCCATGTCGACCCTCTTCTTCCTCCGCATTGCTCCTCTCA
CGCCATGGTGGGGCGCCCTCGCCGCCTGGGTCATGATCCTGCTCATCGTCGAGGCCATCTTCGCCTTCTTCTTCCCCTAC
CGCTGCTGCTTCAACGAAACCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis