Browse Element(s) Details


OsAffx.7328.2.S1_at

Description tigr:9639.m03358
TID=OsAffx.7328.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to kinesin-like polypeptides 7
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3714010/11hypothetical protein
LOC_Os11g376101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37100Os.49949.1.S1_at11/1111+21405019..21407820expressed protein
LOC_Os11g37100Os.49949.1.S2_at11/1111+21405019..21407820expressed protein
LOC_Os11g37110OsAffx.19207.1.S1_at10/1111+21408319..21409548hypothetical protein
LOC_Os11g37120OsAffx.19208.1.S1_at11/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37120Os.51660.1.S1_at1/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37130Os.14640.1.S1_at10/1111+21418836..21422022HCF106 precursor protein, putative, expressed
LOC_Os11g37140OsAffx.7328.2.S1_at10/1111+21424543..21426823hypothetical protein
LOC_Os11g37160OsAffx.7320.1.S1_at11/1111+21434605..21435723hypothetical protein
LOC_Os11g37170OsAffx.8201.1.S1_x_at1/1111+21443224..21449697retrotransposon protein, putative, unclassified
LOC_Os11g37180NANA11+21450297..21453338hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7328.2.S1_at--759--311Chr11:21426406..21426430 (25 bp)
ATACGAGCGAGCTCGCCAGAGGTCA
LOC_Os11g37140
OsAffx.7328.2.S1_at--514--7251Chr11:21426358..21426382 (25 bp)
GTCCGCGCGCATATATGGCGCCGTC
LOC_Os11g37140
OsAffx.7328.2.S1_at--1092--8071Chr11:21426000..21426343 (25 bp)
GGAGCTTTGCTGAGGCGAGAAATCT
LOC_Os11g37140
OsAffx.7328.2.S1_at--652--891Chr11:21425988..21426012 (25 bp)
AGGCGAGAAATCTCACCGGAGAAGC
LOC_Os11g37140
OsAffx.7328.2.S1_at--1103--9391Chr11:21425843..21425964 (25 bp)
TCGTTTCTTGAGGTTTCTATATCTG
LOC_Os11g37140
OsAffx.7328.2.S1_at--530--10751Chr11:21425836..21425857 (22 bp)
TTGAGGTTTCTATATCTGACATGAT
LOC_Os11g37140
OsAffx.7328.2.S1_at--506--3131Chr05:12543391..12543659 (25 bp)
AATTTTGCTCAATGCTTTCCAGATA
NONE
OsAffx.7328.2.S1_at--350--1471Chr11:21425656..21425680 (25 bp)
AGAATGCTTGCAATGGTGTCCATGT
LOC_Os11g37140
OsAffx.7328.2.S1_at--812--6612Chr11:21700278..21700302 (25 bp)
GTTGGCACCACCAGTATGAACTTGA
LOC_Os11g37610
OsAffx.7328.2.S1_at--598--2431Chr11:21424905..21424929 (25 bp)
AAAAGTTCACGTTCTCATATAATAT
LOC_Os11g37140
OsAffx.7328.2.S1_at--927--3751Chr11:21424892..21424916 (25 bp)
CTCATATAATATTCACTTGTGTCAT
LOC_Os11g37140
Target Sequence 
ATACGAGCGAGCTCGCCAGAGGTCACCCTCGTGCTGCTACTTCGTGCCGTCCGCGCGCATATATGGCGCCGTCCGCATGG
AGGAGGAGGAGCTTTGCTGAGGCGAGAAATCTCACCGGAGAAGCAGACAAGCTACCAATGCCAGTGCTCGTTTCTTGAGG
TTTCTATATCTGACATGATGCAAATTTTGCTCAATGCTTTCCAGATAAGAGAGAATGCTTGCAATGGTGTCCATGTTGAG
AACTTGACCGATGAGTATGAGTCAACGGTTGAGGACGTCAATCAGATCTTGATGAAGGGCCTTCCAAACAGAAAAGTTGG
CACCACCAGTATGAACTTGAAAAGTTCACGTTCTCATATAATATTCACTTGTGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7328.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis