Browse Element(s) Details


Os.49949.1.S1_at

Description gb:AK121905.1
DB_XREF= gi:37991528
TID=Os.49949.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49949 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105I06, full insert sequence.
FL= gb:AK121905.1 gb:AK119421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3710011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37060Os.54585.1.S1_at10/1111+21380293..21381601F-box domain containing protein, expressed
LOC_Os11g37070Os.8620.1.S1_at11/1111+21381848..21387407expressed protein
LOC_Os11g37070Os.55144.1.S1_s_at11/1111+21381848..21387407expressed protein
LOC_Os11g37080OsAffx.31339.1.S1_s_at11/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37080Os.10298.1.S1_at10/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37090Os.54176.1.S1_at11/1111+21391552..21395899Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os11g37100Os.49949.1.S1_at11/1111+21405019..21407820expressed protein
LOC_Os11g37100Os.49949.1.S2_at11/1111+21405019..21407820expressed protein
LOC_Os11g37110OsAffx.19207.1.S1_at10/1111+21408319..21409548hypothetical protein
LOC_Os11g37120OsAffx.19208.1.S1_at11/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37120Os.51660.1.S1_at1/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37130Os.14640.1.S1_at10/1111+21418836..21422022HCF106 precursor protein, putative, expressed
LOC_Os11g37140OsAffx.7328.2.S1_at10/1111+21424543..21426823hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49949.1.S1_at--295--651Chr11:21406604..21406628 (25 bp)
ATGCAGGAGCCTGTGGAATGCCAAA
LOC_Os11g37100
Os.49949.1.S1_at--690--6691Chr11:21406652..21406676 (25 bp)
GTTCCAATCACCTGAATCACATGTT
LOC_Os11g37100
Os.49949.1.S1_at--572--1491Chr11:21406701..21406725 (25 bp)
AGCACAATCACTGAATCGCCGGTCT
LOC_Os11g37100
Os.49949.1.S1_at--297--6611Chr11:21406727..21406751 (25 bp)
GATTGGGCAGTCCTCTTGCAATTTC
LOC_Os11g37100
Os.49949.1.S1_at--252--10751Chr11:21406742..21406766 (25 bp)
TTGCAATTTCGATCAGAACCGGCGC
LOC_Os11g37100
Os.49949.1.S1_at--947--5431Chr11:21406757..21406781 (25 bp)
GAACCGGCGCACCAACAGGAGATTG
LOC_Os11g37100
Os.49949.1.S1_at--409--5311Chr11:21406811..21406835 (25 bp)
GAAGGATGGCCTGTTCTTCAGACTT
LOC_Os11g37100
Os.49949.1.S1_at--128--10571Chr11:21406824..21406848 (25 bp)
TTCTTCAGACTTTGCTCGGATGGGA
LOC_Os11g37100
Os.49949.1.S1_at--904--1091Chr11:21406926..21406950 (25 bp)
AGTGGATTTGTGTCAGCTAGCCCCA
LOC_Os11g37100
Os.49949.1.S1_at--272--1571Chr11:21406940..21406964 (25 bp)
AGCTAGCCCCAATGGTGCTACATCA
LOC_Os11g37100
Os.49949.1.S1_at--923--2651Chr11:21406979..21407122 (25 bp)
AAGCCCTCAGGCTTCTGAAAGGCCA
LOC_Os11g37100
Target Sequence 
ATGCAGGAGCCTGTGGAATGCCAAAGGCATGGCAGCCTCTCCAGTTCAGTTCCAATCACCTGAATCACATGTTGTGGATT
CATCCATCATGTGTGAAAGCACAATCACTGAATCGCCGGTCTCGATTGGGCAGTCCTCTTGCAATTTCGATCAGAACCGG
CGCACCAACAGGAGATTGTGGAGCAATGATGGTGTTGATGTTTCTCTGAAGGATGGCCTGTTCTTCAGACTTTGCTCGGA
TGGGAAGTACCTTGAGGATGATTTGGATGAAGTCTGTGACAGTGAAGTAACTGATACCAATTTTGAGTGCACAAACTCAT
TCAGTGGATTTGTGTCAGCTAGCCCCAATGGTGCTACATCAAGAGACAAGACACCAAGCCCTCAGGCTTCTGAAAGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis