Browse Element(s) Details


OsAffx.19207.1.S1_at

Description tigr:9639.m03355
TID=OsAffx.19207.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3711010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37070Os.8620.1.S1_at11/1111+21381848..21387407expressed protein
LOC_Os11g37070Os.55144.1.S1_s_at11/1111+21381848..21387407expressed protein
LOC_Os11g37080OsAffx.31339.1.S1_s_at11/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37080Os.10298.1.S1_at10/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37090Os.54176.1.S1_at11/1111+21391552..21395899Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os11g37100Os.49949.1.S1_at11/1111+21405019..21407820expressed protein
LOC_Os11g37100Os.49949.1.S2_at11/1111+21405019..21407820expressed protein
LOC_Os11g37110OsAffx.19207.1.S1_at10/1111+21408319..21409548hypothetical protein
LOC_Os11g37120OsAffx.19208.1.S1_at11/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37120Os.51660.1.S1_at1/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37130Os.14640.1.S1_at10/1111+21418836..21422022HCF106 precursor protein, putative, expressed
LOC_Os11g37140OsAffx.7328.2.S1_at10/1111+21424543..21426823hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19207.1.S1_at--411--4071Chr11:21409493..21409517 (25 bp)
CGAGCTACCTGTTCGGTATGTTGGT
LOC_Os11g37110
OsAffx.19207.1.S1_at--290--1371Chr11:21409460..21409484 (25 bp)
AGACCAGGCCGGTCGAGCTCAAGCT
LOC_Os11g37110
OsAffx.19207.1.S1_at--345--9711Chr11:21409442..21409466 (25 bp)
TCAAGCTGCCTGAGCTCGGTCAAGA
LOC_Os11g37110
OsAffx.19207.1.S1_at--1--3971Chr11:21409426..21409450 (25 bp)
CGGTCAAGAGCGACCTCATCAAGCT
LOC_Os11g37110
OsAffx.19207.1.S1_at--272--7491NONE
GTGGGATAACACGACGGGACATGAT
NONE
OsAffx.19207.1.S1_at--783--7611Chr11:21408799..21408823 (25 bp)
GGGACATGATCCTACGTTTCTGTGG
LOC_Os11g37110
OsAffx.19207.1.S1_at--439--6811Chr11:21408784..21408808 (25 bp)
GTTTCTGTGGAACATGCCAAAGGCT
LOC_Os11g37110
OsAffx.19207.1.S1_at--668--3491Chr11:21408757..21408781 (25 bp)
CATGGATCAGGTGCGGACTGCCGAA
LOC_Os11g37110
OsAffx.19207.1.S1_at--892--7291Chr11:21408747..21408771 (25 bp)
GTGCGGACTGCCGAACTGCAGAAAC
LOC_Os11g37110
OsAffx.19207.1.S1_at--704--1971Chr11:21408469..21408757 (25 bp)
ACTGCAGAAACATGGGACCGAGGTG
LOC_Os11g37110
OsAffx.19207.1.S1_at--171--10572Chr11:21409171..21409195 (25 bp)
TTCTTCATCATGGAGGAGCGGTCCG
LOC_Os11g37110
Target Sequence 
CGAGCTACCTGTTCGGTATGTTGGTGAAGACGGAGACCAGGCCGGTCGAGCTCAAGCTGCCTGAGCTCGGTCAAGAGCGA
CCTCATCAAGCTGGGGCTCTCGCTGTCGTTCTCGCCGGAGGCGGCCGACCTGCGTGGGATAACACGACGGGACATGATCC
TACGTTTCTGTGGAACATGCCAAAGGCTGGCATGGATCAGGTGCGGACTGCCGAACTGCAGAAACATGGGACCGAGGTGG
CCGCAGTCACCGTGCGCCTGCGTGGCGGTGGCGGGCCACCGCCGGACATGGTCGAGTTCGTCGCCGACCACCCGTTCACC
TTCTTCATCATGGAGGAGCGGTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis