Browse Element(s) Details


Os.55144.1.S1_s_at

Description gb:AK107579.1
DB_XREF= gi:32992788
TID=Os.55144.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55144 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-E01, full insert sequence.
FL= gb:AK107579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3707011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37040Os.53816.1.S1_at11/1111+21359150..21362535expressed protein
LOC_Os11g37050Os.55420.1.A1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.55420.1.A1_x_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S2_at10/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.18929.1.S1_s_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050OsAffx.31368.1.S1_x_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37060Os.54585.1.S1_at10/1111+21380293..21381601F-box domain containing protein, expressed
LOC_Os11g37070Os.8620.1.S1_at11/1111+21381848..21387407expressed protein
LOC_Os11g37070Os.55144.1.S1_s_at11/1111+21381848..21387407expressed protein
LOC_Os11g37080OsAffx.31339.1.S1_s_at11/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37080Os.10298.1.S1_at10/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37090Os.54176.1.S1_at11/1111+21391552..21395899Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os11g37100Os.49949.1.S1_at11/1111+21405019..21407820expressed protein
LOC_Os11g37100Os.49949.1.S2_at11/1111+21405019..21407820expressed protein
LOC_Os11g37110OsAffx.19207.1.S1_at10/1111+21408319..21409548hypothetical protein
LOC_Os11g37120OsAffx.19208.1.S1_at11/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37120Os.51660.1.S1_at1/1111+21411589..21414660Nucleolar protein NOP5, putative

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Gene Ontology Classification
GO idTypeName
GO:0000904biological_processcellular morphogenesis during differentiation
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55144.1.S1_s_at--704--4351Chr11:21386644..21386668 (25 bp)
CCAGACGTGGATGCGAAGCAGCTGA
LOC_Os11g37070
Os.55144.1.S1_s_at--494--5391Chr11:21386630..21386654 (25 bp)
GAAGCAGCTGAAGAGCTCCTTCCTT
LOC_Os11g37070
Os.55144.1.S1_s_at--867--5891Chr11:21386618..21386642 (25 bp)
GAGCTCCTTCCTTAAGATGGTTAAA
LOC_Os11g37070
Os.55144.1.S1_s_at--586--7551Chr11:21386556..21386580 (25 bp)
GGGCCAACGGGAAGATTTCGCAGCT
LOC_Os11g37070
Os.55144.1.S1_s_at--741--10631Chr11:21386540..21386564 (25 bp)
TTCGCAGCTGAAATGCACCGTGTGT
LOC_Os11g37070
Os.55144.1.S1_s_at--868--2671Chr11:21382526..21382550 (25 bp)
AAGCGTGAAGCCACTCTCTGGAAAG
LOC_Os11g37070
Os.55144.1.S1_s_at--186--7771Chr11:21382481..21382505 (25 bp)
GGTGAAATTTGCTAGCAGCCTCGCT
LOC_Os11g37070
Os.55144.1.S1_s_at--171--1331Chr11:21382440..21382464 (25 bp)
AGAGGCTTGCTCAGTCCTTGGAGAA
LOC_Os11g37070
Os.55144.1.S1_s_at--575--2971Chr11:21382395..21382419 (25 bp)
AATGGTATCGCGTCCGTAGTGTTCC
LOC_Os11g37070
Os.55144.1.S1_s_at--527--8131Chr11:21382311..21382335 (25 bp)
GGACATGGGTCCTATATGGCTACTT
LOC_Os11g37070
Os.55144.1.S1_s_at--494--6451Chr11:21382195..21382219 (25 bp)
GATCAACCCTGCTAGAGCTGTGTGT
LOC_Os11g37070
Target Sequence 
CCAGACGTGGATGCGAAGCAGCTGAAGAGCTCCTTCCTTAAGATGGTTAAATTGATGAACGAGAATGCGGAGCAGAAGAA
GAATTACAGGGCCAACGGGAAGATTTCGCAGCTGAAATGCACCGTGTGTGGAAGAAATGGGCTTTGTGGGTGCAAGCGTG
AAGCCACTCTCTGGAAAGGATGGACAGAGATCCATGCTGGTGAAATTTGCTAGCAGCCTCGCTGGTCTCAGCGAGGCCGA
GAGGCTTGCTCAGTCCTTGGAGAAACAAGGCCATGGACGCGCTGAATGGTATCGCGTCCGTAGTGTTCCCCCTGGTGCTG
ATGGGGGCAGCAATCCGCTGCTTGTGAAAGTGGGCGCAAAGGGGGAACGGACATGGGTCCTATATGGCTACTTGGCGACC
GCATGGGACCTGGATGCACTCGACCTGGAGTCGAAGCAAAATGCTGTAATAAAGAGCAGAAAAGAGCTCGATTTGTCATA
ATAGGATCAACCCTGCTAGAGCTGTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55144.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis