Browse Element(s) Details


Os.53816.1.S1_at

Description gb:AK100243.1
DB_XREF= gi:32985452
TID=Os.53816.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53816 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056B15, full insert sequence.
FL= gb:AK100243.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3704011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37000Os.50473.1.S1_at11/1111+21337869..21342223DnaJ domain containing protein, expressed
LOC_Os11g37010Os.54122.1.S1_at11/1111+21348936..21350769expressed protein
LOC_Os11g37020NANA11+21352055..21353460retrotransposon protein, putative, unclassified
LOC_Os11g37040Os.53816.1.S1_at11/1111+21359150..21362535expressed protein
LOC_Os11g37050Os.55420.1.A1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.55420.1.A1_x_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S2_at10/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.18929.1.S1_s_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050OsAffx.31368.1.S1_x_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37060Os.54585.1.S1_at10/1111+21380293..21381601F-box domain containing protein, expressed
LOC_Os11g37070Os.8620.1.S1_at11/1111+21381848..21387407expressed protein
LOC_Os11g37070Os.55144.1.S1_s_at11/1111+21381848..21387407expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53816.1.S1_at--910--4531Chr11:21359724..21359748 (25 bp)
GCCCTCGATATACTTAGCATGCTCA
LOC_Os11g37040
Os.53816.1.S1_at--661--631Chr11:21359706..21359730 (25 bp)
ATGCTCAAAGGCCTACGCTATCTCA
LOC_Os11g37040
Os.53816.1.S1_at--1062--891Chr11:21359656..21359680 (25 bp)
AGGCGCTCTGAGCTTCGTGAAGTTT
LOC_Os11g37040
Os.53816.1.S1_at--114--7531Chr11:21359631..21359655 (25 bp)
GTGGAACTTGTGGATCTTGTCATTG
LOC_Os11g37040
Os.53816.1.S1_at--52--8791Chr11:21359596..21359620 (25 bp)
TGTTAACAGTGTCGCCTTGGGTAAT
LOC_Os11g37040
Os.53816.1.S1_at--610--7171Chr11:21359480..21359504 (25 bp)
GTCTGACACACATCGAACTCAATGG
LOC_Os11g37040
Os.53816.1.S1_at--357--2931Chr11:21359356..21359380 (25 bp)
AAGGCTGTAGGTGCTATCGTACCCC
LOC_Os11g37040
Os.53816.1.S1_at--23--191Chr11:21359284..21359308 (25 bp)
ATTTCTAAATTCTACTACGGCTGCT
LOC_Os11g37040
Os.53816.1.S1_at--1123--1931Chr11:21359268..21359292 (25 bp)
ACGGCTGCTTCTACTATGGAATAAA
LOC_Os11g37040
Os.53816.1.S1_at--321--7131Chr11:21359222..21359246 (25 bp)
GTCATGTTGGACTGGTATTGCACCT
LOC_Os11g37040
Os.53816.1.S1_at--123--5091Chr11:21359203..21359227 (25 bp)
GCACCTTTATGTTTCGAGTGTTAAT
LOC_Os11g37040
Target Sequence 
GCCCTCGATATACTTAGCATGCTCAAAGGCCTACGCTATCTCAGGCTTTGCTACCATTCATTCGCAGAAGGCGCTCTGAG
CTTCGTGAAGTTTGTGGAACTTGTGGATCTTGTCATTGAAGATGATATTGTTAACAGTGTCGCCTTGGGTAATAATACTT
ATGGTGGAGACCCTGATAAACTTGAAAAGATAGTTTGGTCCTTCACTCACATGGAGGAGCTTTCAGGGGTCAGTACGCTG
CAGAGTCTGACACACATCGAACTCAATGGGAGAACATGGCACCTACAGAATCTGGAAAAACTGAAAAGAGAAGTAGATGA
ATGTGGGATTACTTTCACGCTCAATCCACCTGAGAATGGCCAAGGATCAAGGCTGTAGGTGCTATCGTACCCCATAATCA
TCAATGCTGAGAAAGATGGAACTCCGTAATCCTGGGGAGTATTTCTAAATTCTACTACGGCTGCTTCTACTATGGAATAA
AGATGTTTTTCCTCTTCCATCTGTCATGTTGGACTGGTATTGCACCTTTATGTTTCGAGTGTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis