Browse Element(s) Details


Os.54585.1.S1_at

Description gb:AK106009.1
DB_XREF= gi:32991218
TID=Os.54585.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54585 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-A10, full insert sequence.
FL= gb:AK106009.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3706010/11F-box domain containing protein, expressed
LOC_Os11g385008/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37040Os.53816.1.S1_at11/1111+21359150..21362535expressed protein
LOC_Os11g37050Os.55420.1.A1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.55420.1.A1_x_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S2_at10/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.18929.1.S1_s_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050OsAffx.31368.1.S1_x_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37060Os.54585.1.S1_at10/1111+21380293..21381601F-box domain containing protein, expressed
LOC_Os11g37070Os.8620.1.S1_at11/1111+21381848..21387407expressed protein
LOC_Os11g37070Os.55144.1.S1_s_at11/1111+21381848..21387407expressed protein
LOC_Os11g37080OsAffx.31339.1.S1_s_at11/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37080Os.10298.1.S1_at10/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37090Os.54176.1.S1_at11/1111+21391552..21395899Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os11g37100Os.49949.1.S1_at11/1111+21405019..21407820expressed protein
LOC_Os11g37100Os.49949.1.S2_at11/1111+21405019..21407820expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54585.1.S1_at--271--8892Chr11:21381180..21381204 (25 bp)
TGAGTCTTATGTTTGGAATACCACC
LOC_Os11g37060
Os.54585.1.S1_at--520--5272Chr11:21381239..21381263 (25 bp)
GAATGCTCGTGGAAGCATGCGACTT
LOC_Os11g37060
Os.54585.1.S1_at--378--6572Chr11:21381279..21381303 (25 bp)
GATTCTTGGGCACAACCAATCGCTT
LOC_Os11g37060
Os.54585.1.S1_at--492--2652Chr11:21381292..21381316 (25 bp)
AACCAATCGCTTTGTCTCCGTGCTG
LOC_Os11g37060
Os.54585.1.S1_at--125--5232Chr11:21381319..21381343 (25 bp)
GAATATCCTCTGCTGAAGGCGAATC
LOC_Os11g37060
Os.54585.1.S1_at--1047--891Chr11:21381335..21381359 (25 bp)
AGGCGAATCATGTCTACTTCAGTGA
LOC_Os11g37060
Os.54585.1.S1_at--513--6512Chr11:21381403..21381427 (25 bp)
GATATTGGAGTGTTCAACCTGGAAA
LOC_Os11g37060
Os.54585.1.S1_at--507--3232Chr11:21381417..21381441 (25 bp)
CAACCTGGAAAACAACTGCGCTGAG
LOC_Os11g37060
Os.54585.1.S1_at--668--2552Chr11:21381430..21381454 (25 bp)
AACTGCGCTGAGGAAATTGTGTCAC
LOC_Os11g37060
Os.54585.1.S1_at--80--7832Chr11:21381553..21381577 (25 bp)
GGTCATCTATGTATGTACTCTGGTG
LOC_Os11g37060
Os.54585.1.S1_at--41--6871NONE
GTTTGTCCGACTTTACTCTGATTAT
NONE
Target Sequence 
TGAGTCTTATGTTTGGAATACCACCATGATCAAAGTACACAAGGTTGACTTGGTAGCGAGAATGCTCGTGGAAGCATGCG
ACTTGGGTGAGAATGTGCTGATTCTTGGGCACAACCAATCGCTTTGTCTCCGTGCTGANGAATATCCTCTGCTGAAGGCG
AATCATGTCTACTTCAGTGATGATAGAGAGCTCTATATTAAAGGATGCAAGAATGGCTGCCGTGATATTGGAGTGTTCAA
CCTGGAAAACAACTGCGCTGAGGAAATTGTGTCACNTCAGCTTTGGTCGAACTGGCCTCCCCCTGNTTGGATGACACCCA
ATGCNAGAAAAATAAGTTTGGAAACGCACAGTTNGTGATGTTATAGTAGTTCNGGTCATCTATGTATGTACTCTGGTGNT
CAAACATATNTGGATAATGNGCTCANGANTNATTATATTTCTGATGAATGAATTGATGTATATAACATGAGTTTGTCCGA
CTTTACTCTGATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis