Browse Element(s) Details


Os.51985.1.S1_at

Description gb:AK064468.1
DB_XREF= gi:32974486
TID=Os.51985.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51985 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073L03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-G12, full insert sequence.
FL= gb:AK064585.1 gb:AK064468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3705011/11Leucine Rich Repeat family protein, expressed
LOC_Os11g385207/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37010Os.54122.1.S1_at11/1111+21348936..21350769expressed protein
LOC_Os11g37020NANA11+21352055..21353460retrotransposon protein, putative, unclassified
LOC_Os11g37040Os.53816.1.S1_at11/1111+21359150..21362535expressed protein
LOC_Os11g37050Os.55420.1.A1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.55420.1.A1_x_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S2_at10/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.18929.1.S1_s_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050OsAffx.31368.1.S1_x_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37060Os.54585.1.S1_at10/1111+21380293..21381601F-box domain containing protein, expressed
LOC_Os11g37070Os.8620.1.S1_at11/1111+21381848..21387407expressed protein
LOC_Os11g37070Os.55144.1.S1_s_at11/1111+21381848..21387407expressed protein
LOC_Os11g37080OsAffx.31339.1.S1_s_at11/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37080Os.10298.1.S1_at10/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37090Os.54176.1.S1_at11/1111+21391552..21395899Pumilio-family RNA binding repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51985.1.S1_at--545--4772Chr11:21374595..21374619 (25 bp)
GCTGCGGAAGGTTGCTATCATCATG
LOC_Os11g37050
Os.51985.1.S1_at--462--2692Chr11:21374645..21374669 (25 bp)
AAGCTGACTCTTCGTGGTACATTGC
LOC_Os11g37050
Os.51985.1.S1_at--27--7412Chr11:21374679..21374703 (25 bp)
GTGATCTACGAATCATCGCCAGGGA
LOC_Os11g37050
Os.51985.1.S1_at--251--9112Chr11:21374714..21374738 (25 bp)
TGCTGCCTAGTGCTCTTGGAAAACT
LOC_Os11g37050
Os.51985.1.S1_at--199--2252Chr11:21374749..21374773 (25 bp)
AAGCCAGAACCAGATTACCTTCGAA
LOC_Os11g37050
Os.51985.1.S1_at--102--6592Chr11:21374810..21374834 (25 bp)
GATTGCTCTACCATCACCAAGATTA
LOC_Os11g37050
Os.51985.1.S1_at--933--1952Chr11:21374843..21374867 (25 bp)
ACTGGATCAGCTCCTAGGCTCAAGA
LOC_Os11g37050
Os.51985.1.S1_at--789--9451Chr11:21374897..21374921 (25 bp)
TCTGGCATCAACAACCTTCCTAGGT
LOC_Os11g37050
Os.51985.1.S1_at--394--8991Chr11:21375056..21375080 (25 bp)
TGAAGACAATGCTGGGACGTTCCCA
LOC_Os11g37050
Os.51985.1.S1_at--570--5751Chr11:21375071..21375095 (25 bp)
GACGTTCCCATTCCGCTGGAAGAAA
LOC_Os11g37050
Os.51985.1.S1_at--747--1532Chr11:21375114..21375138 (25 bp)
AGCATCTCCTTTTATCCCATGGTGT
LOC_Os11g37050
Target Sequence 
GCTGCGGAAGGTTGCTATCATCATGTTTTTACAATGTTGAACGAATAGCCAAGCTGACTCTTCGTGGTACATTGCTGAAG
CAAGGTGATCTACGAATCATCGCCAGGGAACTAAATATATGCTGCCTAGTGCTCTTGGAAAACTCTTTTGACATAAGCCA
GAACCAGATTACCTTCGAAAAAGAAGAGTTCATATGGCTCAAACTTCTTAGTGTTGATTGCTCTACCATCACCAAGATTA
ACTTCATCACTGGATCAGCTCCTAGGCTCAAGANGATCGTCTGGTCATCTTTCACCTCTCTCTCTGGCATCAACAACCTT
CCTAGGTTGAAGGAGCTCGAGTTCAATGGATACTCAGTCCCAAATGATGTGGAAGAAGCCATTAAAAACAATAAAAGCAT
AAATCTTAAACATAATAAACCATAAGCTCAAGACAAAGCAAAATGGAGATGAATAAGAGGATGAAGACAATGCTGGGACG
TTCCCATTCCGCTGGAAGAAACAGGTTTGTCACCAGAGGAGCATCTCCTTTTATCCCATGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis