Browse Element(s) Details


Os.8620.1.S1_at

Description gb:CB648371
DB_XREF= gi:29643364
DB_XREF=OSJNEb11L16.f
CLONE=OSJNEb11L16
TID=Os.8620.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8620 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566708.1 (A.thaliana) Expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3707011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37040Os.53816.1.S1_at11/1111+21359150..21362535expressed protein
LOC_Os11g37050Os.55420.1.A1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.55420.1.A1_x_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S2_at10/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.18929.1.S1_s_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050OsAffx.31368.1.S1_x_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37060Os.54585.1.S1_at10/1111+21380293..21381601F-box domain containing protein, expressed
LOC_Os11g37070Os.8620.1.S1_at11/1111+21381848..21387407expressed protein
LOC_Os11g37070Os.55144.1.S1_s_at11/1111+21381848..21387407expressed protein
LOC_Os11g37080OsAffx.31339.1.S1_s_at11/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37080Os.10298.1.S1_at10/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37090Os.54176.1.S1_at11/1111+21391552..21395899Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os11g37100Os.49949.1.S1_at11/1111+21405019..21407820expressed protein
LOC_Os11g37100Os.49949.1.S2_at11/1111+21405019..21407820expressed protein
LOC_Os11g37110OsAffx.19207.1.S1_at10/1111+21408319..21409548hypothetical protein
LOC_Os11g37120OsAffx.19208.1.S1_at11/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37120Os.51660.1.S1_at1/1111+21411589..21414660Nucleolar protein NOP5, putative

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Gene Ontology Classification
GO idTypeName
GO:0000904biological_processcellular morphogenesis during differentiation
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8620.1.S1_at--238--5211Chr11:21382067..21382091 (25 bp)
GAATTGTCAGGATTTTTTCTATCGA
LOC_Os11g37070
Os.8620.1.S1_at--813--7911Chr11:21382058..21382082 (25 bp)
GGATTTTTTCTATCGAATAGCCGAT
LOC_Os11g37070
Os.8620.1.S1_at--952--4491Chr11:21382039..21382063 (25 bp)
GCCGATTTCAATACATAATCCCAAG
LOC_Os11g37070
Os.8620.1.S1_at--311--1971Chr11:21382013..21382037 (25 bp)
ACTGATAACTGATTTGGTTGCAAAG
LOC_Os11g37070
Os.8620.1.S1_at--936--1391Chr11:21381990..21382014 (25 bp)
AGAAGTGTTGGAACTCGAAACAGAT
LOC_Os11g37070
Os.8620.1.S1_at--973--9351Chr11:21381976..21382000 (25 bp)
TCGAAACAGATAGGAGATTCTCACT
LOC_Os11g37070
Os.8620.1.S1_at--632--6051Chr11:21381963..21381987 (25 bp)
GAGATTCTCACTGTCCACATGACAT
LOC_Os11g37070
Os.8620.1.S1_at--90--2111Chr11:21381947..21381971 (25 bp)
ACATGACATGCCAGTTCCGGACGTG
LOC_Os11g37070
Os.8620.1.S1_at--490--4411Chr11:21381938..21381962 (25 bp)
GCCAGTTCCGGACGTGTCAAGTTGA
LOC_Os11g37070
Os.8620.1.S1_at--285--6651Chr11:21381903..21381927 (25 bp)
GTTGAGCAACTGTATTTTAAATGGA
LOC_Os11g37070
Os.8620.1.S1_at--718--831Chr11:21381883..21381907 (25 bp)
ATGGATGCATGAACATTCTATGTAT
LOC_Os11g37070
Target Sequence 
GAATTGTCAGGATTTTTTCTATCGAATAGCCGATTTCAATACATAATCCCAAGAACTGATAACTGATTTGGTTGCAAAGA
AGTGTTGGAACTCGAAACAGATAGGAGATTCTCACTGTCCACATGACATGCCAGTTCCGGACGTGTCAAGTTGAAAATTT
AAAAGTTGAGCAACTGTATTTTAAATGGATGCATGAACATTCTATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis