Browse Element(s) Details


OsAffx.19208.1.S1_at

Description tigr:9639.m03356
TID=OsAffx.19208.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SAR DNA binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3712011/11Nucleolar protein NOP5, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37070Os.8620.1.S1_at11/1111+21381848..21387407expressed protein
LOC_Os11g37070Os.55144.1.S1_s_at11/1111+21381848..21387407expressed protein
LOC_Os11g37080OsAffx.31339.1.S1_s_at11/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37080Os.10298.1.S1_at10/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37090Os.54176.1.S1_at11/1111+21391552..21395899Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os11g37100Os.49949.1.S1_at11/1111+21405019..21407820expressed protein
LOC_Os11g37100Os.49949.1.S2_at11/1111+21405019..21407820expressed protein
LOC_Os11g37110OsAffx.19207.1.S1_at10/1111+21408319..21409548hypothetical protein
LOC_Os11g37120OsAffx.19208.1.S1_at11/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37120Os.51660.1.S1_at1/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37130Os.14640.1.S1_at10/1111+21418836..21422022HCF106 precursor protein, putative, expressed
LOC_Os11g37140OsAffx.7328.2.S1_at10/1111+21424543..21426823hypothetical protein
LOC_Os11g37160OsAffx.7320.1.S1_at11/1111+21434605..21435723hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19208.1.S1_at--547--2511Chr11:21412942..21413039 (25 bp)
AACATTCTTGGGAATACCCTGCCTG
LOC_Os11g37120
OsAffx.19208.1.S1_at--425--7291Chr11:21412860..21412884 (25 bp)
GTGCCTGCTGAAGAATCCAATCTGC
LOC_Os11g37120
OsAffx.19208.1.S1_at--409--4751Chr11:21412801..21412825 (25 bp)
GCTGATGTTTCTAAGTCGCTATGGC
LOC_Os11g37120
OsAffx.19208.1.S1_at--49--10211Chr11:21412311..21412335 (25 bp)
TATTGTTAGGGCTGCAGCTACCTTG
LOC_Os11g37120
OsAffx.19208.1.S1_at--45--5071Chr11:21412298..21412322 (25 bp)
GCAGCTACCTTGTTTCATTGTGATA
LOC_Os11g37120
OsAffx.19208.1.S1_at--1013--10071Chr11:21412254..21412278 (25 bp)
TAGGGCATTGCTTGATGTTGGTCAC
LOC_Os11g37120
OsAffx.19208.1.S1_at--371--731Chr11:21412240..21412264 (25 bp)
ATGTTGGTCACTACCTCAAGCGTGA
LOC_Os11g37120
OsAffx.19208.1.S1_at--897--3231Chr11:21412224..21412248 (25 bp)
CAAGCGTGAGTCTGGCATCGACTAT
LOC_Os11g37120
OsAffx.19208.1.S1_at--238--8151Chr11:21412191..21412215 (25 bp)
GGACACTTTAAAACTCGCGACAGCT
LOC_Os11g37120
OsAffx.19208.1.S1_at--1085--5091Chr11:21411708..21411732 (25 bp)
GCACGAGATTGCCTTAGACTCTATG
LOC_Os11g37120
OsAffx.19208.1.S1_at--399--10131Chr11:21411687..21411711 (25 bp)
TATGAAAACCTCGTGGCTGCCTATA
LOC_Os11g37120
Target Sequence 
AACATTCTTGGGAATACCCTGCCTGCATGATGAAGTTGTGATGGAGGTAATGTGGGGCATGAAGCGTTTCATGAGCAATT
TTGTGCCTGCTGAAGAATCCAATCTGCCTAAAGAGGACAGCCTCCCTATGAGTCAAGGACTGCTGATGTTTCTAAGTCGC
TATGGCTTTGATGTCAAACCAGAGATGGTCAACGAGGATATTGTTAGGGCTGCAGCTACCTTGTTTCATTGTGATATTAT
TGAGAAGAAATGTTGTAGGGCATTGCTTGATGTTGGTCACTACCTCAAGCGTGAGTCTGGCATCGACTATGAGAATTGGG
ACACTTTAAAACTCGCGACAGCTTTTAAAATCATATGCAGCCGTAAAATTGGTGATTCTGATGAGATGTTTTCAGACGAC
GTGCAATCAAAGTTGCCGGATGATGCAGATAAATACAAAGATCTTGTATATGCACGAGATTGCCTTAGACTCTATGAAAA
CCTCGTGGCTGCCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis