Browse Element(s) Details


OsAffx.31345.1.S1_at

Description tigr:9639.m03397
TID=OsAffx.31345.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3754011/11Serine/threonine-protein kinase Doa, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37510Os.13975.1.S1_at11/1111+21638610..21642206ribosomal protein L4/L1 family protein, expressed
LOC_Os11g37520Os.6117.1.S1_at11/1111+21649398..21654156ETO1-like protein 1, putative, expressed
LOC_Os11g37530NANA11+21655234..21657383hypothetical protein
LOC_Os11g37540OsAffx.31345.1.S1_at11/1111+21666648..21672150Serine/threonine-protein kinase Doa, putative, expressed
LOC_Os11g37540Os.55756.1.S1_at11/1111+21666648..21672150Serine/threonine-protein kinase Doa, putative, expressed
LOC_Os11g37550OsAffx.31346.1.S1_at11/1111+21672153..21673433Calmodulin-2/3/5, putative
LOC_Os11g37560Os.53358.1.S1_at11/1111+21674169..21677560expressed protein
LOC_Os11g37570OsAffx.19218.1.S1_at11/1111+21679829..21680233hypothetical protein
LOC_Os11g37580OsAffx.31347.2.S1_at11/1111+21685141..21686361hypothetical protein
LOC_Os11g37590NANA11+21688410..21691504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37600NANA11+21694010..21696875transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31345.1.S1_at--1136--8251Chr11:21670957..21671216 (25 bp)
GGCATCCTATACTAAACTGTGGGCA
LOC_Os11g37540
OsAffx.31345.1.S1_at--872--6871Chr11:21671226..21671250 (25 bp)
GTATTTATTATGCTTCTCCTTGAAA
LOC_Os11g37540
OsAffx.31345.1.S1_at--670--131Chr11:21671269..21671293 (25 bp)
ATTAAGAGCACCCATTTCACGGAAT
LOC_Os11g37540
OsAffx.31345.1.S1_at--428--8211Chr11:21671289..21671313 (25 bp)
GGAATGCACCGATGAGAACTACACA
LOC_Os11g37540
OsAffx.31345.1.S1_at--148--5971Chr11:21671302..21671326 (25 bp)
GAGAACTACACACAAGCTACTGCCT
LOC_Os11g37540
OsAffx.31345.1.S1_at--1091--2691Chr11:21671315..21671339 (25 bp)
AAGCTACTGCCTACTGTTTCTGTTA
LOC_Os11g37540
OsAffx.31345.1.S1_at--689--6791Chr11:21671336..21671360 (25 bp)
GTTATTTGCATCCTGCTAAACTTGA
LOC_Os11g37540
OsAffx.31345.1.S1_at--432--8791Chr11:21671370..21671394 (25 bp)
TGTTAATGCCACTATCAGGCCAGCC
LOC_Os11g37540
OsAffx.31345.1.S1_at--233--4551Chr11:21671392..21671416 (25 bp)
GCCCATGCCTTGCAGTTCTATTTTA
LOC_Os11g37540
OsAffx.31345.1.S1_at--536--10131Chr11:21671415..21671439 (25 bp)
TATGACCACTTTATTCATTGATGTG
LOC_Os11g37540
OsAffx.31345.1.S1_at--904--6251Chr11:21671434..21671458 (25 bp)
GATGTGGTTCCATCTCTTAACATAT
LOC_Os11g37540
Target Sequence 
GGCATCCTATACTAAACTGTGGGCATAATGCATTGTATTTATTATGCTTCTCCTTGAAATATGAAGATGACAATGGAATT
AAGAGCACCCATTTCACGGAATGCACCGATGAGAACTACACACAAGCTACTGCCTACTGTTTCTGTTATTTGCATCCTGC
TAAACTTGAAAATAATTATGTTAATGCCACTATCAGGCCAGCCCATGCCTTGCAGTTCTATTTTATGACCACTTTATTCA
TTGATGTGGTTCCATCTCTTAACATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis