Browse Element(s) Details


OsAffx.7329.1.S1_at

Description tigr:9639.m03410
TID=OsAffx.7329.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=selenium-binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3766011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37620OsAffx.31348.1.S1_at11/1111+21702411..21703353hypothetical protein
LOC_Os11g37630OsAffx.31349.1.S1_x_at11/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.31349.2.S1_x_at10/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.15454.1.S1_x_at1/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.15454.2.S1_x_at1/1111+21706956..21711324hypothetical protein
LOC_Os11g37640Os.11161.1.S1_at11/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640OsAffx.19219.1.S1_at10/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640Os.39305.1.A1_at1/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640Os.39305.1.A1_x_at1/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37650OsAffx.19220.1.S1_at9/1111+21720431..21725273hypothetical protein
LOC_Os11g37660OsAffx.7329.1.S1_at11/1111+21727528..21729717pentatricopeptide, putative, expressed
LOC_Os11g37670OsAffx.31350.1.S1_at11/1111+21740077..21743107expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7329.1.S1_at--1045--7971Chr11:21728059..21728083 (25 bp)
GGATGTAATCTCTTGGACGTCTATG
LOC_Os11g37660
OsAffx.7329.1.S1_at--236--8111Chr11:21728045..21728069 (25 bp)
GGACGTCTATGATGCAGGTATATGC
LOC_Os11g37660
OsAffx.7329.1.S1_at--518--5411Chr11:21727959..21727983 (25 bp)
GAACCAAACCACTACACTTTTCTTG
LOC_Os11g37660
OsAffx.7329.1.S1_at--304--2171Chr11:21727946..21727970 (25 bp)
ACACTTTTCTTGCTGTACTATCTGC
LOC_Os11g37660
OsAffx.7329.1.S1_at--613--10831Chr11:21727828..21727852 (25 bp)
TTGTGTTGTTGATATGCTCTGCCGT
LOC_Os11g37660
OsAffx.7329.1.S1_at--453--9491Chr11:21727811..21727835 (25 bp)
TCTGCCGTGCAGGACGTTTGACTGA
LOC_Os11g37660
OsAffx.7329.1.S1_at--446--5751Chr11:21727799..21727823 (25 bp)
GACGTTTGACTGATGCATACCACCT
LOC_Os11g37660
OsAffx.7329.1.S1_at--511--2671Chr11:21727717..21727741 (25 bp)
AAGCGCTTCCCGTTCATGTGGAGAT
LOC_Os11g37660
OsAffx.7329.1.S1_at--30--2412Chr12:23814120..23814147 (23 bp)
AAACATCTCTTATCTCTTGATCCAG
NONE
OsAffx.7329.1.S1_at--191--4931Chr11:21727621..21727645 (25 bp)
GCTTGCTGATATTTATGTCTTGCTT
LOC_Os11g37660
OsAffx.7329.1.S1_at--243--1071Chr11:21727590..21727614 (25 bp)
AGGGATGACGCTGACAATCTCCTAA
LOC_Os11g37660
Target Sequence 
GGATGTAATCTCTTGGACGTCTATGATGCAGGTATATGCGTGGAATGGACATGTTAATGAAGTTGTTAAACTTTATGAGG
TGATGAAGAAAACAGAAACAGAACCAAACCACTACACTTTTCTTGCTGTACTATCTGCATGTAAAAACACAGGTCTTGTT
GAGGAAGGAATGGAATTGATCAAGTACATGCAAGAGAAGTGTGGCCTAAAACCAGAAATTGAGCATATTTCTTGTGTTGT
TGATATGCTCTGCCGTGCAGGACGTTTGACTGATGCATACCACCTTATTAAATATAATAATTCTGAACACATTAACAATA
CAATATTGTGGGGGACGCTGCTAAGCGCTTCCCGTTCATGTGGAGATTTGGTGATCGGAGAAGCAGCAGCCAAACATCTC
TTATCTCTTGATCCAGAAAATAGGGCCAACTCTAAGATGCTTGCTGATATTTATGTCTTGCTTGGGAGAAGGGATGACGC
TGACAATCTCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis