Browse Element(s) Details


Os.56102.1.S1_x_at

Description gb:AK109259.1
DB_XREF= gi:32994468
TID=Os.56102.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-185-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-185-A11, full insert sequence.
FL= gb:AK109259.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4801010/11nuclear matrix constituent protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47970Os.11709.1.S1_at11/112+29335385..29352022calpain, putative, expressed
LOC_Os02g47970Os.11709.1.S2_at11/112+29335385..29352022calpain, putative, expressed
LOC_Os02g47980Os.51734.1.S1_x_at11/112+29358233..29359562uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os02g47990OsAffx.25007.2.S1_at1/112+29360332..29361301retrotransposon protein, putative, LINE subclass
LOC_Os02g48000Os.10869.1.S1_at11/112+29367151..29375217TBC domain containing protein, expressed
LOC_Os02g48010Os.11658.1.S2_at11/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48010Os.11658.1.S1_at11/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48010Os.56102.1.S1_x_at10/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48020OsAffx.24774.1.S1_at11/112+29390261..29390748hypothetical protein
LOC_Os02g48030NANA2+29394455..29395504hypothetical protein
LOC_Os02g48040OsAffx.2994.1.S1_at10/112+29399394..29401166hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56102.1.S1_x_at--164--7911Chr02:29382166..29382190 (25 bp)
GGTTCGTTTATTGGATGAGCCGTGA
LOC_Os02g48010
Os.56102.1.S1_x_at--1030--5291Chr02:29382126..29382150 (25 bp)
GAAGGCGTGATGTTTACTCCGCAGG
LOC_Os02g48010
Os.56102.1.S1_x_at--398--5331Chr02:29382010..29382034 (25 bp)
GAAAGGGACTACTCTGCGGGTCGCC
LOC_Os02g48010
Os.56102.1.S1_x_at--1030--7231NONE
GTCGCCGAACTGGAACTCAATCATT
NONE
Os.56102.1.S1_x_at--142--3191Chr02:29377925..29377949 (25 bp)
CAATCATTTGATGGCAACACGGACA
LOC_Os02g48010
Os.56102.1.S1_x_at--939--2471Chr02:29377910..29377934 (25 bp)
AACACGGACATGGTGGTGGACACAA
LOC_Os02g48010
Os.56102.1.S1_x_at--981--2171Chr02:29377867..29377891 (25 bp)
AAAACGGGAAGGACTCGGCAGTGCT
LOC_Os02g48010
Os.56102.1.S1_x_at--886--5011Chr02:29377850..29377874 (25 bp)
GCAGTGCTTCCCGTTGTAGATTTGG
LOC_Os02g48010
Os.56102.1.S1_x_at--88--371Chr02:29377815..29377839 (25 bp)
ATCAAAACAAGGACGGCGCCAACAA
LOC_Os02g48010
Os.56102.1.S1_x_at--89--2391Chr02:29377760..29377784 (25 bp)
AAACGGACACGGTCTGTTCTTGCGG
LOC_Os02g48010
Os.56102.1.S1_x_at--1150--1911Chr02:29377752..29377776 (25 bp)
ACGGTCTGTTCTTGCGGTAGTTGAA
LOC_Os02g48010
Target Sequence 
GGTTCGTTTATTGGATGAGCCGTGAGGAAATTGGGAGGAAGAAGGCGTGATGTTTACTCCGCAGGGGAAGGGGTGGACCG
GGTGGTCGACGCCGGCTCCGGCGAACCAGCGGAGCGGTGGCGGCGCTCCCGCCGCGTCGGCGCCCCTTGGCAAGGGGAAA
GGGACTACTCTGCGGGTCGCCGAACTGGAACTCAATCATTTGATGGCAACACGGACATGGTGGTGGACACAACTATTGTG
GATGTTGACCAAAACGGGAAGGACTCGGCAGTGCTTCCCGTTGTAGATTTGGAGCCTGAAACATCAAAACAAGGACGGCG
CCAACAAAACAGGAAGGGTAGAGCAAAAGGTGGTGTAAAACGGACACGGTCTGTTCTTGCGGTAGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56102.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis