Browse Element(s) Details


Os.56165.1.S1_at

Description gb:AK109522.1
DB_XREF= gi:32994731
TID=Os.56165.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56165 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) transcription factor MADS29 mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F04, full insert sequence.
FL= gb:AK109522.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0743011/11MADS-box protein ZMM17, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07380NANA2+3811254..3817625retrotransposon protein, putative, unclassified
LOC_Os02g07390NANA2+3820396..3820992hypothetical protein
LOC_Os02g07400NANA2+3821687..3824174retrotransposon protein, putative, unclassified
LOC_Os02g07410Os.7295.1.S1_at10/112+3827833..3830155Glycine cleavage system H protein, mitochondrial precursor, putative, expressed
LOC_Os02g07420Os.55262.1.S1_at11/112+3830522..3832332expressed protein
LOC_Os02g07420Os.55262.1.S1_x_at11/112+3830522..3832332expressed protein
LOC_Os02g07430Os.56165.1.S1_at11/112+3833127..3837132MADS-box protein ZMM17, putative, expressed
LOC_Os02g07440OsAffx.2537.1.S1_at11/112+3843535..3843984hypothetical protein
LOC_Os02g07450Os.10876.1.S1_at11/112+3846200..3850113Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os02g07460NANA2+3853274..3853732expressed protein
LOC_Os02g07480Os.24548.1.A1_at11/112+3855963..3863869Transglycosylase SLT domain PF|01464 containing protein, putative, expressed
LOC_Os02g07480Os.52209.1.S1_at11/112+3855963..3863869Transglycosylase SLT domain PF|01464 containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008360biological_processregulation of cell shape
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0009933biological_processmeristem organization
GO:0010023biological_processproanthocyanidin biosynthesis
GO:0045941biological_processpositive regulation of transcription
GO:0048440biological_processcarpel development
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56165.1.S1_at--478--1951Chr02:3833791..3833815 (25 bp)
ACGGCCTGCAGCTGTGGTAAGAACA
LOC_Os02g07430
Os.56165.1.S1_at--543--2711Chr02:3833757..3833781 (25 bp)
AAGCATACATGGCACATCCTGATAC
LOC_Os02g07430
Os.56165.1.S1_at--1159--6031Chr02:3833489..3833513 (25 bp)
GAGATCTAGATGATTGCTTGCTAAT
LOC_Os02g07430
Os.56165.1.S1_at--486--851Chr02:3833454..3833478 (25 bp)
ATGGCATTGTCGATTCTGGGAGCTA
LOC_Os02g07430
Os.56165.1.S1_at--581--5911Chr02:3833435..3833459 (25 bp)
GAGCTAGGAGTAACTTGGAGACCAT
LOC_Os02g07430
Os.56165.1.S1_at--622--291Chr02:3833388..3833412 (25 bp)
ATAGACGATCGAGTTGGGTTGCTGT
LOC_Os02g07430
Os.56165.1.S1_at--95--9751Chr02:3833256..3833280 (25 bp)
TAATCAAGCTTTTCTACCTAGTTAA
LOC_Os02g07430
Os.56165.1.S1_at--1018--4291Chr02:3833240..3833264 (25 bp)
CCTAGTTAACTAGTACAGCTGCTAA
LOC_Os02g07430
Os.56165.1.S1_at--353--2151Chr02:3833226..3833250 (25 bp)
ACAGCTGCTAAGTACCTTTTGATTT
LOC_Os02g07430
Os.56165.1.S1_at--1027--10771Chr02:3833203..3833227 (25 bp)
TTGTTGGTGTGTGAACTACTGAACT
LOC_Os02g07430
Os.56165.1.S1_at--620--10211Chr02:3833169..3833193 (25 bp)
TATTAAGGTCTCCATGCATTTGCAT
LOC_Os02g07430
Target Sequence 
ACGGCCTGCAGCTGTGGTAAGAACAAACGAAGCAAAGCATACATGGCACATCCTGATACTCTCATCAGAGATCTAGATGA
TTGCTTGCTAATTAAGCACATGATGGCATTGTCGATTCTGGGAGCTAGGAGTAACTTGGAGACCATGAAGATGCATGATC
AGCTGATGATAGACGATCGAGTTGGGTTGCTGTGTTGTTCAATTGTTCATCGTTCTGGACATATATATATATATATATGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTAATTAGCACATCAGAATAATCAAGCTTTTCTACCTA
GTTAACTAGTACAGCTGCTAAGTACCTTTTGATTTGTTGGTGTGTGAACTACTGAACTGGAGTTGGATATTAAGGTCTCC
ATGCATTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis