Browse Element(s) Details


OsAffx.2537.1.S1_at

Description tigr:9630.m00692
TID=OsAffx.2537.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0744011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07390NANA2+3820396..3820992hypothetical protein
LOC_Os02g07400NANA2+3821687..3824174retrotransposon protein, putative, unclassified
LOC_Os02g07410Os.7295.1.S1_at10/112+3827833..3830155Glycine cleavage system H protein, mitochondrial precursor, putative, expressed
LOC_Os02g07420Os.55262.1.S1_at11/112+3830522..3832332expressed protein
LOC_Os02g07420Os.55262.1.S1_x_at11/112+3830522..3832332expressed protein
LOC_Os02g07430Os.56165.1.S1_at11/112+3833127..3837132MADS-box protein ZMM17, putative, expressed
LOC_Os02g07440OsAffx.2537.1.S1_at11/112+3843535..3843984hypothetical protein
LOC_Os02g07450Os.10876.1.S1_at11/112+3846200..3850113Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os02g07460NANA2+3853274..3853732expressed protein
LOC_Os02g07480Os.24548.1.A1_at11/112+3855963..3863869Transglycosylase SLT domain PF|01464 containing protein, putative, expressed
LOC_Os02g07480Os.52209.1.S1_at11/112+3855963..3863869Transglycosylase SLT domain PF|01464 containing protein, putative, expressed
LOC_Os02g07470OsAffx.11928.1.S1_at11/112+3863744..3864874hypothetical protein
LOC_Os02g07490Os.48052.1.S1_at11/112+3868112..3872942Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2537.1.S1_at--935--9511Chr02:3843582..3843725 (25 bp)
TCTCACGGCCCACTATTCGGATATG
LOC_Os02g07440
OsAffx.2537.1.S1_at--398--1931Chr02:3843586..3843817 (25 bp)
ACGGCCCACTATTCGGATATGTCGA
LOC_Os02g07440
OsAffx.2537.1.S1_at--346--4551Chr02:3843589..3843820 (25 bp)
GCCCACTATTCGGATATGTCGATGA
LOC_Os02g07440
OsAffx.2537.1.S1_at--40--771Chr02:3843811..3843835 (25 bp)
ATGTCGATGAAGGTGTCGGCCGATT
LOC_Os02g07440
OsAffx.2537.1.S1_at--202--8731Chr02:3843824..3843848 (25 bp)
TGTCGGCCGATTGTCAGAGCGTCAA
LOC_Os02g07440
OsAffx.2537.1.S1_at--1022--8391Chr02:3843828..3843852 (25 bp)
GGCCGATTGTCAGAGCGTCAACGTA
LOC_Os02g07440
OsAffx.2537.1.S1_at--638--31Chr02:3843833..3843857 (25 bp)
ATTGTCAGAGCGTCAACGTACCCGG
LOC_Os02g07440
OsAffx.2537.1.S1_at--1096--8791Chr02:3843862..3843886 (25 bp)
TGTTCTCCCACAACGTGCGATGATA
LOC_Os02g07440
OsAffx.2537.1.S1_at--892--2571Chr02:3843873..3843897 (25 bp)
AACGTGCGATGATAACTGCAAGTCG
LOC_Os02g07440
OsAffx.2537.1.S1_at--386--1971Chr02:3843887..3843911 (25 bp)
ACTGCAAGTCGCAAATAGGTGCTGG
LOC_Os02g07440
OsAffx.2537.1.S1_at--801--7471Chr02:3843911..3843935 (25 bp)
GGGCTGTTGGCGAGTGTACGTCCGG
LOC_Os02g07440
Target Sequence 
TCTCACGGCCCACTATTCGGATATGTCGATGAAGGTGTCGGCCGATTGTCAGAGCGTCAACGTACCCGGCCCCTGTTCTC
CCACAACGTGCGATGATAACTGCAAGTCGCAAATAGGTGCTGGGGCTGTTGGCGAGTGTACGTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis