Browse Element(s) Details


Os.48052.1.S1_at

Description gb:AK070032.1
DB_XREF= gi:32980056
TID=Os.48052.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48052 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036H06, full insert sequence.
FL= gb:AK059005.1 gb:AK070032.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0749011/11Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07440OsAffx.2537.1.S1_at11/112+3843535..3843984hypothetical protein
LOC_Os02g07450Os.10876.1.S1_at11/112+3846200..3850113Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os02g07460NANA2+3853274..3853732expressed protein
LOC_Os02g07480Os.24548.1.A1_at11/112+3855963..3863869Transglycosylase SLT domain PF|01464 containing protein, putative, expressed
LOC_Os02g07480Os.52209.1.S1_at11/112+3855963..3863869Transglycosylase SLT domain PF|01464 containing protein, putative, expressed
LOC_Os02g07470OsAffx.11928.1.S1_at11/112+3863744..3864874hypothetical protein
LOC_Os02g07490Os.48052.1.S1_at11/112+3868112..3872942Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os02g07500OsAffx.8801.1.S1_at1/112+3879912..3882999hypothetical protein
LOC_Os02g07510NANA2+3886548..3888154hypothetical protein
LOC_Os02g07520OsAffx.22699.1.S1_x_at2/112+3888538..3895439retrotransposon protein, putative, unclassified
LOC_Os02g07520Os.45161.1.A1_x_at1/112+3888538..3895439retrotransposon protein, putative, unclassified
LOC_Os02g07520OsAffx.16451.1.A1_x_at1/112+3888538..3895439retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0006950biological_processresponse to stress
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004365molecular_functionglyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
GO:0008886molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NADP+) activity
GO:0008943molecular_functionglyceraldehyde-3-phosphate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48052.1.S1_at--1129--6251Chr02:3872270..3872294 (25 bp)
GATGTGGTTTCCAATGACTTCGTTG
LOC_Os02g07490
Os.48052.1.S1_at--930--10831Chr02:3872418..3872442 (25 bp)
TTGGACTGAGCTCTTCCTTCATGAA
LOC_Os02g07490
Os.48052.1.S1_at--316--2631Chr02:3872575..3872599 (25 bp)
AACCGTGTGTTGGATCTGATTGCCC
LOC_Os02g07490
Os.48052.1.S1_at--246--8831Chr02:3872591..3872615 (25 bp)
TGATTGCCCACATGGCTCTTGTCAA
LOC_Os02g07490
Os.48052.1.S1_at--590--10811Chr02:3872609..3872633 (25 bp)
TTGTCAACGCCAAGCACTGATTTGT
LOC_Os02g07490
Os.48052.1.S1_at--1055--2271Chr02:3872637..3872661 (25 bp)
AAATCCTCCTCCGATAGTATCTAGC
LOC_Os02g07490
Os.48052.1.S1_at--156--2951Chr02:3872667..3872691 (25 bp)
AAGGCTGCAATTTTGACGGTCTCTT
LOC_Os02g07490
Os.48052.1.S1_at--242--1931Chr02:3872682..3872706 (25 bp)
ACGGTCTCTTTCTGTTGTCTTGGAA
LOC_Os02g07490
Os.48052.1.S1_at--291--191Chr02:3872784..3872808 (25 bp)
ATTTACTCTGTATCGACCTGGGCAA
LOC_Os02g07490
Os.48052.1.S1_at--1074--7351Chr02:3872822..3872846 (25 bp)
GTGAACCATATGTCGGCAACCTGAT
LOC_Os02g07490
Os.48052.1.S1_at--635--6111Chr02:3872856..3872880 (25 bp)
GAGTCCAATGCTATGCCATTCTATA
LOC_Os02g07490
Target Sequence 
GATGTGGTTTCCAATGACTTCGTTGGTGATGCAAGGTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTC
CTTCATGAAGCTTGTGTCATGGTANGACAACGAGTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCCACATGGCTC
TTGTCAACGCCAAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTAGCTAGGAAAGGCTGCAATTTTGACGGTCT
CTTTCTGTTGTCTTGGAATAAGATGTAAACTTGGAAACAAAGCAAAAAAAGAATGGACATTGATGTCCATGACATTGTTT
GTAGCAGGCGGTGAAATTTACTCTGTATCGACCTGGGCAAGCGGAACTGTTGAGTGAACCATATGTCGGCAACCTGATTG
ATTCATTGAGTCCAATGCTATGCCATTCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis