Browse Element(s) Details


OsAffx.11928.1.S1_at

Description tigr:9630.m00696
TID=OsAffx.11928.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0747011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07440OsAffx.2537.1.S1_at11/112+3843535..3843984hypothetical protein
LOC_Os02g07450Os.10876.1.S1_at11/112+3846200..3850113Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os02g07460NANA2+3853274..3853732expressed protein
LOC_Os02g07480Os.24548.1.A1_at11/112+3855963..3863869Transglycosylase SLT domain PF|01464 containing protein, putative, expressed
LOC_Os02g07480Os.52209.1.S1_at11/112+3855963..3863869Transglycosylase SLT domain PF|01464 containing protein, putative, expressed
LOC_Os02g07470OsAffx.11928.1.S1_at11/112+3863744..3864874hypothetical protein
LOC_Os02g07490Os.48052.1.S1_at11/112+3868112..3872942Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os02g07500OsAffx.8801.1.S1_at1/112+3879912..3882999hypothetical protein
LOC_Os02g07510NANA2+3886548..3888154hypothetical protein
LOC_Os02g07520OsAffx.22699.1.S1_x_at2/112+3888538..3895439retrotransposon protein, putative, unclassified
LOC_Os02g07520Os.45161.1.A1_x_at1/112+3888538..3895439retrotransposon protein, putative, unclassified
LOC_Os02g07520OsAffx.16451.1.A1_x_at1/112+3888538..3895439retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11928.1.S1_at--339--1371Chr02:3864275..3864299 (25 bp)
AGACGCCACATTCTCCTTCGAGGCG
LOC_Os02g07470
OsAffx.11928.1.S1_at--225--6211Chr02:3864294..3864318 (25 bp)
GAGGCGTCCCGGTGACACTCATCGT
LOC_Os02g07470
OsAffx.11928.1.S1_at--85--7771Chr02:3864304..3864328 (25 bp)
GGTGACACTCATCGTGCTACTGCTA
LOC_Os02g07470
OsAffx.11928.1.S1_at--673--4971Chr02:3864354..3864378 (25 bp)
GCATCTCTCTCGTCAACAGTCGGTT
LOC_Os02g07470
OsAffx.11928.1.S1_at--262--551Chr02:3864506..3864530 (25 bp)
ATCCCTATCGGCATCAATGACACCG
LOC_Os02g07470
OsAffx.11928.1.S1_at--947--4151Chr02:3864559..3864583 (25 bp)
CGCCACGACGCGTAATCCTGACGGG
LOC_Os02g07470
OsAffx.11928.1.S1_at--65--9271Chr02:3864672..3864696 (25 bp)
TCCTCGTGCTAGAGCCCATGCTTGG
LOC_Os02g07470
OsAffx.11928.1.S1_at--147--3234Chr02:3864730..3864754 (25 bp)
CAAGTACAGGCCGTCATACTTCAGC
LOC_Os02g07470
OsAffx.11928.1.S1_at--797--311Chr02:3864745..3864769 (25 bp)
ATACTTCAGCAACGCGCAACACCGT
LOC_Os02g07470
OsAffx.11928.1.S1_at--564--4591Chr02:3864758..3864782 (25 bp)
GCGCAACACCGTTCCAACCGAGGTG
LOC_Os02g07470
OsAffx.11928.1.S1_at--940--4775Chr12:16545186..16545207 (22 bp)
GCTCCCTCGGGCTCGCTTGAAGAGC
NONE
Target Sequence 
AGACGCCACATTCTCCTTCGAGGCGTCCCGGTGACACTCATCGTGCTACTGCTACCGCCGCAGCCGACCTGCCTCCACCG
CATCTCTCTCGTCAACAGTCGGTTCCGCCGCGTGCTCACTAGCCGCCGGTTCCTCCACCATTTCAGCGACCTCCACATCA
GCGCGCCAGGGGCTCCCCTCGTCGGGTTCTTCCACAACCACAACCATGGCGCCTGGGCGAACAACCGCTCCATCCCTATC
GGCATCAATGACACCGGGGACTGCCGTCGGAGCCACCATCGCGGCGCCACGACGCGTAATCCTGACGGGGTGTTCGCCTT
GGGCGACGCCGCCGAGTGGCACGTCGTCGGCTCCCGTGGCGGGCGCGTCCTCCTCCTTAGCCCCACCCAGCTCCGCCTCC
TCGTGCTAGAGCCCATGCTTGGTCGCCGCCAGTACATCCCGGTGCCACCGGCGCCCAAGTACAGGCCGTCATACTTCAGC
AACGCGCAACACCGTTCCAACCGAGGTGCCCGCACTGGCCCGCGCCTCGTCGCACGATCACCAGCGCTCCCTCGGGCTCG
CTTGAAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis