Browse Element(s) Details


Os.56177.1.S1_at

Description gb:AK109559.1
DB_XREF= gi:32994768
TID=Os.56177.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56177 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-B02, full insert sequence.
FL= gb:AK109559.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1898011/11hypothetical protein
LOC_Os05g045702/11hypothetical protein
LOC_Os04g060001/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18947Os.21166.1.A1_at11/1111+10764536..10769596Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g18954Os.47463.1.S1_x_at6/1111+10777296..10780993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18954Os.14491.2.S1_x_at5/1111+10777296..10780993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18961NANA11+10783652..10786984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18970OsAffx.31051.1.S1_at11/1111+10790591..10791272hypothetical protein
LOC_Os11g18980OsAffx.7151.1.S1_at11/1111+10792812..10796566hypothetical protein
LOC_Os11g18980Os.56177.1.S1_at11/1111+10792812..10796566hypothetical protein
LOC_Os11g18980Os.41248.2.A1_at4/1111+10792812..10796566hypothetical protein
LOC_Os11g18980Os.41248.5.S1_x_at2/1111+10792812..10796566hypothetical protein
LOC_Os11g18990Os.50434.1.S1_at1/1111+10803308..10804956histidine triad family protein, putative
LOC_Os11g19000NANA11+10814264..10814881transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19010NANA11+10816380..10817165transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19020NANA11+10817680..10818980hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56177.1.S1_at--491--9411Chr11:10793772..10793796 (25 bp)
TCGTCGGCGCCTCCGAGCAAGGATA
LOC_Os11g18980
Os.56177.1.S1_at--834--3791Chr11:10793782..10793806 (25 bp)
CTCCGAGCAAGGATAGGGCCGCTGC
LOC_Os11g18980
Os.56177.1.S1_at--525--4251Chr11:10793812..10793836 (25 bp)
CCGTGCTCCCCGATATGGATAGGGC
LOC_Os11g18980
Os.56177.1.S1_at--915--4231Chr11:10793821..10793845 (25 bp)
CCGATATGGATAGGGCCGCCCCAAG
LOC_Os11g18980
Os.56177.1.S1_at--475--9671Chr11:10793973..10793997 (25 bp)
TCAGCGACGTCATCCCTGCGAGTGC
LOC_Os11g18980
Os.56177.1.S1_at--550--1331Chr11:10794050..10794074 (25 bp)
AGAGGGTGACGTGGATATATGACAT
LOC_Os11g18980
Os.56177.1.S1_at--453--3351Chr11:10794127..10794151 (25 bp)
CACCGAGGGATTTTGGGTGACCAGT
LOC_Os11g18980
Os.56177.1.S1_at--728--6531Chr11:10794135..10794159 (25 bp)
GATTTTGGGTGACCAGTTTTGTATA
LOC_Os11g18980
Os.56177.1.S1_at--1040--3772Chr12:578368..578606 (25 bp)
CTCGGTTGTCTGGTATTGCGGTTCA
NONE
Os.56177.1.S1_at--867--10819Chr12:578588..578611 (24 bp)
TTGTCTGGTATTGCGGTTCAAGGAC
NONE
Os.56177.1.S1_at--85--106122Chr12:578620..578639 (20 bp)
TTCGTATCTCGGTGACAAGTTCAGG
NONE
Target Sequence 
TCGTCGGCGCCTCCGAGCAAGGATAGGGCCGCTGCCGCCGCCGTGCTCCCCGATATGGATAGGGCCGCCCCAAGCCCGAG
CGCCGCCTCTCCTGCCTCGCCCCGCCGAGCTCCGAGCCGGCCACCGCCCTTCACCACCGGCGTCCTCCTCCTCCTTCGCC
GCCGCATCGACGGCTTGCCCCGCTGCTCCCTCCCGGCCGCCTCAGCGACGTCATCCCTGCGAGTGCGAGAGCAGAGCGAG
AGGAAGGAAAGAGAAACAGAGAAAGAGAAAGGGGAAAGAGAGGGTGACGTGGATATATGACATGTGGGGCCCACGCTGAC
TCAGCCGCCACATAGACCAAAACCGGGGTCAAAACCACCGAGGGATTTTGGGTGACCAGTTTTGTATAGTTAGGGGACCT
CGGTTGTCTGGTATTGCGGTTCAAGGACGTTTTCGTATCTCGGTGACAAGTTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis