Browse Element(s) Details


Os.56188.1.S1_at

Description gb:AK109577.1
DB_XREF= gi:32994786
TID=Os.56188.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56188 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E08, full insert sequence.
FL= gb:AK109577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3849011/11expressed protein
LOC_Os08g371701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38460Os.2987.3.S1_x_at2/112+23245931..23248303retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g38470Os.50593.1.S2_at11/112+23249218..23256428B3 DNA binding domain containing protein, expressed
LOC_Os02g38470Os.50593.1.S1_at10/112+23249218..23256428B3 DNA binding domain containing protein, expressed
LOC_Os02g38480Os.26372.1.S1_s_at11/112+23259034..23266080expressed protein
LOC_Os02g38490Os.56188.1.S1_at11/112+23266654..23267437expressed protein
LOC_Os02g38499Os.54542.1.S1_at11/112+23280102..23281397F-box domain containing protein, expressed
LOC_Os02g38508NANA2+23281857..23283000expressed protein
LOC_Os02g38520NANA2+23285504..23290910retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56188.1.S1_at--275--3472Chr08:23351464..23351487 (24 bp)
CAGGGTAGCCGGTGATCTCTACAAT
LOC_Os08g37170
Os.56188.1.S1_at--913--6231Chr02:23267214..23267238 (25 bp)
GATGGAATCCACAAGTCAGGCGTTT
LOC_Os02g38490
Os.56188.1.S1_at--690--7752Chr08:23351525..23352021 (25 bp)
GGTGTTGAATGCTGGCTGTTTTGCT
NONE
Os.56188.1.S1_at--921--4731Chr02:23267255..23267279 (25 bp)
GCTGTTTTGCTGAATGTCTTCGGTT
LOC_Os02g38490
Os.56188.1.S1_at--322--7151Chr02:23267270..23267294 (25 bp)
GTCTTCGGTTTATTTTCATCTTTGA
LOC_Os02g38490
Os.56188.1.S1_at--831--171Chr02:23267281..23267305 (25 bp)
ATTTTCATCTTTGAGCTGCTGTAGT
LOC_Os02g38490
Os.56188.1.S1_at--897--4771Chr02:23267295..23267319 (25 bp)
GCTGCTGTAGTTAACATGGCTGTCA
LOC_Os02g38490
Os.56188.1.S1_at--918--852Chr08:23351594..23351618 (25 bp)
ATGGCTGTCATGTTTTGGGTCAGGC
NONE
Os.56188.1.S1_at--576--212Chr08:23351603..23351627 (25 bp)
ATGTTTTGGGTCAGGCCCCATGGGC
NONE
Os.56188.1.S1_at--727--4532Chr08:23351617..23351641 (25 bp)
GCCCCATGGGCTTGTGTGATGTTTA
NONE
Os.56188.1.S1_at--455--2271Chr02:23267410..23267434 (25 bp)
AAATGGGAGGGTCTCCGCTCTCTGT
LOC_Os02g38490
Target Sequence 
CAGGGTAGCCGGTGATCTCTACAATGCAAGTCATGGATGGAATCCACAAGTCAGGCGTTTGGGGTGTTGAATGCTGGCTG
TTTTGCTGAATGTCTTCGGTTTATTTTCATCTTTGAGCTGCTGTAGTTAACATGGCTGTCATGTTTTGGGTCAGGCCCCA
TGGGCTTGTGTGATGTTTAGTTTCNTTACTTGCTCTGANACCTTTNGTAAGAATCTTATCATTTCGTTAATGAAATGGGA
GGGTCTCCGCTCTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis