Browse Element(s) Details


Os.56232.1.S1_at

Description gb:AK109662.1
DB_XREF= gi:32994871
TID=Os.56232.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56232 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-H06, full insert sequence.
FL= gb:AK109662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4806011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48020OsAffx.24774.1.S1_at11/112+29390261..29390748hypothetical protein
LOC_Os02g48030NANA2+29394455..29395504hypothetical protein
LOC_Os02g48040OsAffx.2994.1.S1_at10/112+29399394..29401166hypothetical protein
LOC_Os02g48050OsAffx.2995.1.S1_at11/112+29409281..29410874hypothetical protein
LOC_Os02g48050OsAffx.5258.1.S1_x_at2/112+29409281..29410874hypothetical protein
LOC_Os02g48060Os.56232.1.S1_at11/112+29415532..29417120Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g48070OsAffx.24775.1.S1_at11/112+29421140..29421424hypothetical protein
LOC_Os02g48080Os.16139.1.S1_at10/112+29423895..29426578Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os02g48090OsAffx.12545.1.S1_at11/112+29428158..29428742hypothetical protein
LOC_Os02g48100OsAffx.12546.1.S1_x_at11/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48100Os.17476.1.S1_at10/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48100OsAffx.12546.1.S1_at10/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56232.1.S1_at--413--7111Chr02:29416496..29416520 (25 bp)
GTCACCATGCTCGAGAAGGCCATCA
LOC_Os02g48060
Os.56232.1.S1_at--528--2891Chr02:29416646..29416669 (24 bp)
AAGGTTCTTGCGACGGACGAGTTCT
LOC_Os02g48060
Os.56232.1.S1_at--418--2951Chr02:29416687..29416711 (25 bp)
AAGGCGCCGGAGATATCCCAGGTGA
LOC_Os02g48060
Os.56232.1.S1_at--797--4151Chr02:29416745..29416769 (25 bp)
CGCCGCTGATGGGACAACTCATGAA
LOC_Os02g48060
Os.56232.1.S1_at--403--931Chr02:29416856..29416880 (25 bp)
AGGCATATGCATACGTACGCAGGCA
LOC_Os02g48060
Os.56232.1.S1_at--253--10371Chr02:29416895..29416919 (25 bp)
TTTTTCTCTCGCCACTGATCATTAG
LOC_Os02g48060
Os.56232.1.S1_at--541--151Chr02:29416915..29416939 (25 bp)
ATTAGCGCTATCAATGTACCTTTTT
LOC_Os02g48060
Os.56232.1.S1_at--749--4651Chr02:29416956..29416980 (25 bp)
GCGTGACACACGTACAGGGAGGTTT
LOC_Os02g48060
Os.56232.1.S1_at--1103--4831Chr02:29416989..29417013 (25 bp)
GCTAAACCTTGTGGTCATGTTCTTG
LOC_Os02g48060
Os.56232.1.S1_at--319--4191Chr02:29417036..29417060 (25 bp)
CCCTTTTCTCTCTTCATGATATGGA
LOC_Os02g48060
Os.56232.1.S1_at--410--7971Chr02:29417058..29417082 (25 bp)
GGATCGTTCCATCATGTAAGTTTTA
LOC_Os02g48060
Target Sequence 
GTCACCATGCTCGAGAAGGCCATCAGCTACGTCAAGTTCCTCCAGCTTCAAGTCAAGGTTCTTGCGACGGACGAGTTCTG
GCCGGCGCAGGGAGGGAAGGCGCCGGAGATATCCCAGGTGAAGGAGGCGCTCGACGCCATCTTGTCGTCGTCGTCGCCGC
TGATGGGACAACTCATGAACTGAACTACTACTGTAGAAGAAGAAACTACGATAGAAATTATTAATCAATAACGAACCACC
TCGTTCGAAGATAAATAATCAAGGGAGGCATATGCATACGTACGCAGGCACAAAACTTTTGTTTTTTTTCTCTCGCCACT
GATCATTAGCGCTATCAATGTACCTTTTTTTAGGGGAGTTAATTAGCGTGACACACGTACAGGGAGGTTTAACATTTTGC
TAAACCTTGTGGTCATGTTCTTGTGTACTGCGACTAAATACAACCCCCTTTTCTCTCTTCATGATATGGATCGTTCCATC
ATGTAAGTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis