Browse Element(s) Details


Os.56264.1.S1_at

Description gb:AK109714.1
DB_XREF= gi:32994923
TID=Os.56264.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-H07, full insert sequence.
FL= gb:AK109714.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2409011/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g24040Os.55085.1.S1_at1/117+13626518..13633387expressed protein
LOC_Os07g24050OsAffx.5425.1.S1_at11/117+13636574..13640975carboxyl-terminal proteinase, putative
LOC_Os07g24060NANA7+13641882..13644420retrotransposon, putative, centromere-specific
LOC_Os07g24070Os.19099.1.S1_x_at2/117+13645876..13648016retrotransposon, putative, centromere-specific
LOC_Os07g24080NANA7+13649363..13650006retrotransposon, putative, centromere-specific
LOC_Os07g24090Os.56264.1.S1_at11/117+13652647..13654147mTERF family protein, expressed
LOC_Os07g24100OsAffx.16391.1.S1_at5/117+13658145..13668557retrotransposon protein, putative, unclassified
LOC_Os07g24100OsAffx.28520.1.S1_at1/117+13658145..13668557retrotransposon protein, putative, unclassified
LOC_Os07g24100OsAffx.25212.1.S1_at1/117+13658145..13668557retrotransposon protein, putative, unclassified
LOC_Os07g24100Os.27422.1.S1_at1/117+13658145..13668557retrotransposon protein, putative, unclassified
LOC_Os07g24110OsAffx.19542.3.S1_x_at5/117+13671667..13675481retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56264.1.S1_at--337--10751Chr07:13653152..13653176 (25 bp)
TTGAGGCGTTTGTGAGGCACCCGTA
LOC_Os07g24090
Os.56264.1.S1_at--294--4031Chr07:13653131..13653155 (25 bp)
CGTACTGCATGTCCGTGTCGAATGA
LOC_Os07g24090
Os.56264.1.S1_at--711--9611Chr07:13653095..13653119 (25 bp)
TCATCTGGCAGTTTCTCGCGAAGAA
LOC_Os07g24090
Os.56264.1.S1_at--986--1051Chr07:13653066..13653090 (25 bp)
AGGTGGACCACCGATTATGTCGCAA
LOC_Os07g24090
Os.56264.1.S1_at--970--10431Chr07:13653052..13653076 (25 bp)
TTATGTCGCAAGGAGCCCGATGGTT
LOC_Os07g24090
Os.56264.1.S1_at--23--8591Chr07:13653032..13653056 (25 bp)
TGGTTCTCTCCTTCAGCTACGATAA
LOC_Os07g24090
Os.56264.1.S1_at--280--5111Chr07:13652990..13653014 (25 bp)
GCACGGTGCTGAACTTGTTGGCATC
LOC_Os07g24090
Os.56264.1.S1_at--296--971Chr07:13652903..13652927 (25 bp)
AGGAGAAGTATGTCACCCCTTACCA
LOC_Os07g24090
Os.56264.1.S1_at--255--7211Chr07:13652831..13652855 (25 bp)
GTCGAGTCCCCGTGTATAAGTAGCT
LOC_Os07g24090
Os.56264.1.S1_at--600--6551Chr07:13652800..13652824 (25 bp)
GATTATGCTGCGCTTCACCGTGCAA
LOC_Os07g24090
Os.56264.1.S1_at--344--4431Chr07:13652765..13652789 (25 bp)
GCCTTCCCCTTGACTTTAATTATGT
LOC_Os07g24090
Target Sequence 
TTGAGGCGTTTGTGAGGCACCCGTACTGCATGTCCGTGTCGAATGACAAGGTGAAGCTCATCTGGCAGTTTCTCGCGAAG
AAGCTCAGGTGGACCACCGATTATGTCGCAAGGAGCCCGATGGTTCTCTCCTTCAGCTACGATAAGCGAATCTTGCCAAG
GTGCACGGTGCTGAACTTGTTGGCATCGAGGGGCATATTCAACAGGGACATCAAGACATCCCATCTGGTACTGGGGGAGA
AGAAGTTTAAGGAGAAGTATGTCACCCCTTACCAGGATGAAATTCCTGAGGTACTGGAAGCTTATTCTTCTGTGGCAGAA
AGTCGAGTCCCCGTGTATAAGTAGCTGGAGAGGATTATGCTGCGCTTCACCGTGCAACAAAGGCACTGCCTTCCCCTTGA
CTTTAATTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis