Browse Element(s) Details


Os.56275.1.S1_x_at

Description gb:AK109732.1
DB_XREF= gi:32994941
TID=Os.56275.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-C03, full insert sequence.
FL= gb:AK109732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g411009/11CCT motif family protein, expressed
LOC_Os07g157701/11CCT motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41050Os.46506.1.S1_at11/1110+21716848..21718761expressed protein
LOC_Os10g41060Os.46540.1.S1_at11/1110+21725326..21727262expressed protein
LOC_Os10g41070OsAffx.30743.2.S1_x_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41070OsAffx.30743.2.S1_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41079NANA10+21732717..21734674hypothetical protein
LOC_Os10g41090OsAffx.20135.1.S1_at11/1110+21737039..21737656hypothetical protein
LOC_Os10g41090OsAffx.20135.1.S1_x_at11/1110+21737039..21737656hypothetical protein
LOC_Os10g41100Os.10751.1.S1_at11/1110+21739966..21742761CCT motif family protein, expressed
LOC_Os10g41100Os.56275.1.S1_x_at9/1110+21739966..21742761CCT motif family protein, expressed
LOC_Os10g41110Os.27665.1.S1_at6/1110+21750525..21753511Autophagocytosis associated protein, N-terminal domain containing protein
LOC_Os10g41120Os.11299.1.S1_x_at10/1110+21754135..21757445expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009909biological_processregulation of flower development
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56275.1.S1_x_at--258--8391NONE
GGCGACGTCGAGCAGCACAATCATG
NONE
Os.56275.1.S1_x_at--490--2231NONE
ACAATCATGTCCTTCTGTGGGAGCA
NONE
Os.56275.1.S1_x_at--499--3652Chr10:21740546..21740570 (25 bp)
CTTCTGTGGGAGCACGTTCACTGAC
LOC_Os10g41100
Os.56275.1.S1_x_at--118--1591Chr10:21740515..21740539 (25 bp)
AGCTCCATCCCGAAAGATCACGCGG
LOC_Os10g41100
Os.56275.1.S1_x_at--286--6251Chr10:21740214..21740238 (25 bp)
GATGGTTCCGTTCGTAGCTAGCAGC
LOC_Os10g41100
Os.56275.1.S1_x_at--766--10011Chr10:21740196..21740220 (25 bp)
TAGCAGCCTAGCACTATAATAGCAG
LOC_Os10g41100
Os.56275.1.S1_x_at--88--3111Chr10:21740179..21740203 (25 bp)
AATAGCAGATCATTATTTCTCTCTT
LOC_Os10g41100
Os.56275.1.S1_x_at--1138--9511Chr10:21740162..21740186 (25 bp)
TCTCTCTTTGTATACGTACTCTACG
LOC_Os10g41100
Os.56275.1.S1_x_at--918--6991Chr10:21740147..21740171 (25 bp)
GTACTCTACGTACATAGGCCAAGCA
LOC_Os10g41100
Os.56275.1.S1_x_at--959--271Chr10:21740134..21740158 (25 bp)
ATAGGCCAAGCATGCATTGACTAGC
LOC_Os10g41100
Os.56275.1.S1_x_at--534--4991Chr10:21740125..21740149 (25 bp)
GCATGCATTGACTAGCTAGGCTATT
LOC_Os10g41100
Target Sequence 
GGCGACGTCGAGCAGCACAATCATGTCCTTCTGTGGGAGCACGTTCACTGACGCCGTGAGCTCCATCCCGAAAGATCACG
CGGCGGCGGCGGCGGTCGTTGCCAACGGCGGCCTGAGCGGCGGCGGCGGCGACCCGGCGATGGACCGGGAGGCGAAGGTG
ATGCGGTACAAGGAGAAGAGGAAGCGGAGGCGATACGAGAAGCAGATCCGGTACGCCTCGCGCAAGGCCTACGCCGAGAT
GCGGCCGCGCGTGAAGGGCCGCTTCGCCAAGGTGCCCGACGGCGAGCTGGACGGCGCGACACCGCCGCCGCCGTCCTCCG
CCGCCGGCGGCGGCTACGAGCCCGGCCGGCTCGACCTCGGATGGTTCCGTTCGTAGCTAGCAGCCTAGCACTATAATAGC
AGATCATTATTTCTCTCTTTGTATACGTACTCTACGTACATAGGCCAAGCATGCATTGACTAGCTAGGCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56275.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis