Browse Element(s) Details


Os.56296.1.S1_at

Description gb:AK109791.1
DB_XREF= gi:32995000
TID=Os.56296.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-D09, full insert sequence.
FL= gb:AK109791.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0948011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09450Os.49080.1.S1_at10/117+4976267..4979956DNAJ protein, putative, expressed
LOC_Os07g09460OsAffx.16174.1.S1_at11/117+4986453..4996726expressed protein
LOC_Os07g09470NANA7+4997119..4998846Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os07g09480Os.56296.1.S1_at11/117+5002172..5004026ATPase, AAA family protein, expressed
LOC_Os07g09490OsAffx.28363.1.S1_at11/117+5007890..5009323Cell Division Protein AAA ATPase family, putative
LOC_Os07g09490OsAffx.25760.1.S1_x_at1/117+5007890..5009323Cell Division Protein AAA ATPase family, putative
LOC_Os07g09500OsAffx.16175.1.S1_at10/117+5011088..5012727hypothetical protein
LOC_Os07g09510Os.9419.1.S1_at10/117+5013651..5018509retrotransposon protein, putative, unclassified, expressed
LOC_Os07g09520OsAffx.28364.1.S1_at11/117+5021990..5025978HIPL1 protein precursor, putative, expressed
LOC_Os07g09520OsAffx.28364.1.S1_x_at11/117+5021990..5025978HIPL1 protein precursor, putative, expressed
LOC_Os07g09530OsAffx.28365.1.S1_at11/117+5028926..5032124hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56296.1.S1_at--1042--1811Chr07:5003532..5003556 (25 bp)
ACGCCGTGGACGACATACTGGACAA
LOC_Os07g09480
Os.56296.1.S1_at--446--2231Chr07:5003553..5003577 (25 bp)
ACAAGGAGGACATCACGCCGGCCGA
LOC_Os07g09480
Os.56296.1.S1_at--204--8191Chr07:5003758..5003782 (25 bp)
GGAAGACGACGACCATTATTCGGAT
LOC_Os07g09480
Os.56296.1.S1_at--312--5851Chr07:5003768..5003792 (25 bp)
GACCATTATTCGGATGATTACACTG
LOC_Os07g09480
Os.56296.1.S1_at--971--4071Chr07:5003806..5003830 (25 bp)
CGACGACGATTGATTCAAGCTAAGA
LOC_Os07g09480
Os.56296.1.S1_at--58--3091Chr07:5003858..5003882 (25 bp)
AATCAACGGTCAATTCTCTGCGAAA
LOC_Os07g09480
Os.56296.1.S1_at--763--3151Chr07:5003869..5003893 (25 bp)
AATTCTCTGCGAAAACTGATACTGT
LOC_Os07g09480
Os.56296.1.S1_at--266--1971Chr07:5003883..5003907 (25 bp)
ACTGATACTGTTGCACTGACTGATG
LOC_Os07g09480
Os.56296.1.S1_at--48--3851Chr07:5003898..5003922 (25 bp)
CTGACTGATGTGTAGCTGTTCGAAC
LOC_Os07g09480
Os.56296.1.S1_at--12--6271Chr07:5003904..5003928 (25 bp)
GATGTGTAGCTGTTCGAACTTCGAA
LOC_Os07g09480
Os.56296.1.S1_at--902--3891Chr07:5003946..5003970 (25 bp)
CTGGTGTTTGGTTCATTTCCTGTAA
LOC_Os07g09480
Target Sequence 
ACGCCGTGGACGACATACTGGACAAGGAGGACATCACGCCGGCCGACGTCGCCGAGTGCCTCATGGCGGCCAAGCGCTCC
TCCGACTCCGACGTGACCTCCTCCCTCGAGTTCTTGGTCGACGAGCTCAACAAGAGAGCAATGGAGAACGCCAAGGCGGT
GGCCGAAGCGAAGGCGAGGGCGGAGGCGGAGGCGGAAGCCAAGGCAATGGCTGACGACGACTCGGAGGAAGACGACGACC
ATTATTCGGATGATTACACTGACGACGACGACTACGACGACGATTGATTCAAGCTAAGAACTCAAAATGCACAAGAAGAT
ACAAAGAATCAACGGTCAATTCTCTGCGAAAACTGATACTGTTGCACTGACTGATGTGTAGCTGTTCGAACTTCGAAACG
AAATTTAAATGTAGCTGGTGTTTGGTTCATTTCCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis