Browse Element(s) Details


Os.56310.1.A1_at

Description gb:AK109831.1
DB_XREF= gi:32995040
TID=Os.56310.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56310 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-C06, full insert sequence.
FL= gb:AK109831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2169010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21670OsAffx.32344.1.S1_at5/116+12511115..12512338retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21680OsAffx.26050.28.S1_s_at11/116+12512742..12513686hypothetical protein
LOC_Os06g21690Os.56310.1.A1_s_at11/116+12536159..12537577expressed protein
LOC_Os06g21690Os.56310.1.A1_at10/116+12536159..12537577expressed protein
LOC_Os06g21700NANA6+12540967..12545539retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21710NANA6+12548755..12552502transposon protein, putative, unclassified, expressed
LOC_Os06g21720Os.26709.1.S1_at1/116+12554481..12554816S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase, putative
LOC_Os06g21730NANA6+12556855..12560057hypothetical protein
LOC_Os06g21740OsAffx.22699.1.S1_x_at1/116+12560467..12567386retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56310.1.A1_at--421--6671Chr06:12537380..12537404 (25 bp)
GTTGCTAATTGTTGTTCTTGTGCCC
LOC_Os06g21690
Os.56310.1.A1_at--73--3171Chr06:12537386..12537410 (25 bp)
AATTGTTGTTCTTGTGCCCTAACTA
LOC_Os06g21690
Os.56310.1.A1_at--545--8791Chr06:12537392..12537416 (25 bp)
TGTTCTTGTGCCCTAACTAGTTTGG
LOC_Os06g21690
Os.56310.1.A1_at--715--7271Chr06:12537399..12537423 (25 bp)
GTGCCCTAACTAGTTTGGGTGTAAT
LOC_Os06g21690
Os.56310.1.A1_at--533--3171Chr06:12537432..12537456 (25 bp)
AATTGTTGTATTTTAGTATGTGCAC
LOC_Os06g21690
Os.56310.1.A1_at--202--6931Chr06:12537447..12537471 (25 bp)
GTATGTGCACTTGTATGGGTGTTGA
LOC_Os06g21690
Os.56310.1.A1_at--600--5111Chr06:12537453..12537477 (25 bp)
GCACTTGTATGGGTGTTGATGAATC
LOC_Os06g21690
Os.56310.1.A1_at--810--6311Chr06:12537470..12537494 (25 bp)
GATGAATCATGGACATATATCAGTA
LOC_Os06g21690
Os.56310.1.A1_at--380--9651Chr06:12537489..12537513 (25 bp)
TCAGTATTGCATGATCTCGATTATA
LOC_Os06g21690
Os.56310.1.A1_at--880--6411Chr06:12537501..12537525 (25 bp)
GATCTCGATTATAATGCAGAGCAAA
LOC_Os06g21690
Os.56310.1.A1_at--544--8791NONE
TGTTCTTAGGGTTTTATGGAAGGAT
NONE
Target Sequence 
GTTGCTAATTGTTGTTCTTGTGCCCTAACTAGTTTGGGTGTAATATTGTGTTAATTGTTGTATTTTAGTATGTGCACTTG
TATGGGTGTTGATGAATCATGGACATATATCAGTATTGCATGATCTCGATTATAATGCAGAGCAAAATCTGCAAATTTGT
TCTTAGGGTTTTATGGAAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56310.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis