Browse Element(s) Details


Os.56310.1.A1_s_at

Description gb:AK109831.1
DB_XREF= gi:32995040
TID=Os.56310.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56310 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-C06, full insert sequence.
FL= gb:AK109831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2169011/11expressed protein
LOC_Os03g030341/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21670OsAffx.32344.1.S1_at5/116+12511115..12512338retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21680OsAffx.26050.28.S1_s_at11/116+12512742..12513686hypothetical protein
LOC_Os06g21690Os.56310.1.A1_s_at11/116+12536159..12537577expressed protein
LOC_Os06g21690Os.56310.1.A1_at10/116+12536159..12537577expressed protein
LOC_Os06g21700NANA6+12540967..12545539retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21710NANA6+12548755..12552502transposon protein, putative, unclassified, expressed
LOC_Os06g21720Os.26709.1.S1_at1/116+12554481..12554816S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase, putative
LOC_Os06g21730NANA6+12556855..12560057hypothetical protein
LOC_Os06g21740OsAffx.22699.1.S1_x_at1/116+12560467..12567386retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0019748biological_processsecondary metabolism
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56310.1.A1_s_at--437--7191Chr06:12537001..12537025 (25 bp)
GTCGGTCGCCGCAATGGAATTTCGT
LOC_Os06g21690
Os.56310.1.A1_s_at--247--8151Chr06:12537016..12537040 (25 bp)
GGAATTTCGTCCACGGTACTCACGG
LOC_Os06g21690
Os.56310.1.A1_s_at--512--5791Chr06:12537075..12537099 (25 bp)
GACGACAGTGAAGGATGCTCCTCCT
LOC_Os06g21690
Os.56310.1.A1_s_at--609--2131Chr06:12537079..12537103 (25 bp)
ACAGTGAAGGATGCTCCTCCTGCTG
LOC_Os06g21690
Os.56310.1.A1_s_at--446--2591Chr06:12537121..12537145 (25 bp)
AACGACGTCCATGGCGATGCTGATG
LOC_Os06g21690
Os.56310.1.A1_s_at--1001--611Chr06:12537137..12537161 (25 bp)
ATGCTGATGAGCAACACCCTGGCTA
LOC_Os06g21690
Os.56310.1.A1_s_at--595--1811Chr06:12537152..12537176 (25 bp)
ACCCTGGCTATGGTGATCACGGCGA
LOC_Os06g21690
Os.56310.1.A1_s_at--1096--5811Chr06:12537184..12537208 (25 bp)
GACCGCAAGCCTCGACGCAGATCAT
LOC_Os06g21690
Os.56310.1.A1_s_at--662--3731Chr06:12537236..12537260 (25 bp)
CTACATATTGGCTGTGCTGTGAATT
LOC_Os06g21690
Os.56310.1.A1_s_at--214--4731Chr06:12537251..12537275 (25 bp)
GCTGTGAATTGTGATCCTCGTTCTT
LOC_Os06g21690
Os.56310.1.A1_s_at--187--8352Chr06:12537303..12537327 (25 bp)
GGCTGGTGATCAACGATGCATATAT
LOC_Os06g21690
Target Sequence 
GTCGGTCGCCGCAATGGAATTTCGTCCACGGTACTCACGGCGCCGCCGCCAGTGGGACCCANGGCTGCTCCAGCGACGAC
AGTGAAGGATGCTCCTCCTGCTGCTGCTGCTGCTGCCGCCAACGACGTCCATGGCGATGCTGATGAGCAACACCCTGGCT
ATGGTGATCACGGCGAGGTCGACGACCGCAAGCCTCGACGCAGATCATGGTTGTGAGGTGAGCAATGGCACGCAACTACA
TATTGGCTGTGCTGTGAATTGTGATCCTCGTTCTTTATGCATATGCCGCTCTCGGCGCTGCTGGCTGGTGATCAACGATG
CATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56310.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis