Browse Element(s) Details


Os.56335.1.S1_at

Description gb:AK109874.1
DB_XREF= gi:32995083
TID=Os.56335.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-B09, full insert sequence.
FL= gb:AK109874.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3068011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30630OsAffx.7260.1.S1_at3/1111+17330636..17331001NA
LOC_Os11g30640NANA11+17334158..17334634hypothetical protein
LOC_Os11g30650NANA11+17342303..17345516retrotransposon protein, putative, unclassified
LOC_Os11g30660OsAffx.19090.1.S1_at11/1111+17347308..17348429hypothetical protein
LOC_Os11g30670NANA11+17349527..17352024retrotransposon protein, putative, LINE subclass
LOC_Os11g30680Os.56335.1.S1_at11/1111+17353956..17355495expressed protein
LOC_Os11g30690NANA11+17371649..17372014hypothetical protein
LOC_Os11g30700NANA11+17376700..17381509retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56335.1.S1_at--941--3371Chr11:17354418..17354442 (25 bp)
CACCAATTTCTTCGTGGCGCTATAC
LOC_Os11g30680
Os.56335.1.S1_at--397--1811Chr11:17354392..17354416 (25 bp)
ACCCGTCAGCTCTGGGAATGCTAAT
LOC_Os11g30680
Os.56335.1.S1_at--1067--4831Chr11:17354373..17354397 (25 bp)
GCTAATGGCGGCGTACTCAACCTAC
LOC_Os11g30680
Os.56335.1.S1_at--862--8911Chr11:17354323..17354347 (25 bp)
TGAGCTGGCTGTTCAAATGCTTCGT
LOC_Os11g30680
Os.56335.1.S1_at--651--2271Chr11:17354309..17354333 (25 bp)
AAATGCTTCGTGTGGCTCTTGGTCG
LOC_Os11g30680
Os.56335.1.S1_at--639--9571Chr11:17354293..17354317 (25 bp)
TCTTGGTCGGCAGCATCGTCACGTA
LOC_Os11g30680
Os.56335.1.S1_at--694--511Chr11:17354279..17354303 (25 bp)
ATCGTCACGTACCTGTGTCGGATGG
LOC_Os11g30680
Os.56335.1.S1_at--993--7511Chr11:17354207..17354231 (25 bp)
GTGGAACTACTGTGGACTCGGATGA
LOC_Os11g30680
Os.56335.1.S1_at--49--9451Chr11:17354190..17354214 (25 bp)
TCGGATGAGCGTCATTCTCGCACTA
LOC_Os11g30680
Os.56335.1.S1_at--65--1991Chr11:17354166..17354190 (25 bp)
ACTCGCCTTGGCTTTTTGCGTAATA
LOC_Os11g30680
Os.56335.1.S1_at--71--1271Chr11:17353986..17354010 (25 bp)
AGATATTTGCAGTGGGCACCGTACC
LOC_Os11g30680
Target Sequence 
CACCAATTTCTTCGTGGCGCTATACCACCCGTCAGCTCTGGGAATGCTAATGGCGGCGTACTCAACCTACGCCGGCGGCA
AGGAGGCGGCACACCTGAGCTGGCTGTTCAAATGCTTCGTGTGGCTCTTGGTCGGCAGCATCGTCACGTACCTGTGTCGG
ATGGTGATTAAGGTGGAGATGCGAGGGGCGTCGACATTGGTGCGTAGGAAGGTGGAACTACTGTGGACTCGGATGAGCGT
CATTCTCGCACTACTCGCCTTGGCTTTTTGCGTAATAGCCGTGGTGGTTCCCGGGAGCCGGAGCGAGATTGTAGCTGTTT
TCGTTTAAGGGATTGCGAATTGGTTATTTTTGCTACAGTACACCATAACTTCGTGGTTTTAGCTGTTGGATATGGCAAAA
AGAGACTTTTGGGTGAAAACACCTCAAAAGTTAGATATTTGCAGTGGGCACCGTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis