Browse Element(s) Details


OsAffx.7260.1.S1_at

Description tigr:9639.m02772
TID=OsAffx.7260.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g306303/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30590Os.40626.1.S1_at5/1111+17305183..17308975hAT family dimerisation domain containing protein
LOC_Os11g30590Os.40626.2.S1_x_at5/1111+17305183..17308975hAT family dimerisation domain containing protein
LOC_Os11g30600OsAffx.7259.1.S1_at11/1111+17314337..17317634hypothetical protein
LOC_Os11g30600OsAffx.31230.1.S1_at11/1111+17314337..17317634hypothetical protein
LOC_Os11g30620Os.56208.1.S1_at11/1111+17326822..17328667expressed protein
LOC_Os11g30630OsAffx.7260.1.S1_at3/1111+17330636..17331001NA
LOC_Os11g30640NANA11+17334158..17334634hypothetical protein
LOC_Os11g30650NANA11+17342303..17345516retrotransposon protein, putative, unclassified
LOC_Os11g30660OsAffx.19090.1.S1_at11/1111+17347308..17348429hypothetical protein
LOC_Os11g30670NANA11+17349527..17352024retrotransposon protein, putative, LINE subclass
LOC_Os11g30680Os.56335.1.S1_at11/1111+17353956..17355495expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7260.1.S1_at--513--9291Chr11:17330668..17330692 (25 bp)
TCCGTCCCTGACCTCAGGAGCAGTG
LOC_Os11g30630
OsAffx.7260.1.S1_at--1149--9291Chr11:17330672..17330696 (25 bp)
TCCCTGACCTCAGGAGCAGTGGCGG
LOC_Os11g30630
OsAffx.7260.1.S1_at--795--4191Chr11:17330716..17330740 (25 bp)
CCCCGACTTCGGAAGTGAAGGCGAT
LOC_Os11g30630
OsAffx.7260.1.S1_at--84--4211Chr11:17330782..17331002 (25 bp)
CCCCTATGCGCACTGTCTGCATAAG
NONE
OsAffx.7260.1.S1_at--227--611Chr11:17330787..17331007 (25 bp)
ATGCGCACTGTCTGCATAAGCACAC
NONE
OsAffx.7260.1.S1_at--453--5111Chr11:17330791..17331011 (25 bp)
GCACTGTCTGCATAAGCACACGCAT
NONE
OsAffx.7260.1.S1_at--571--7171Chr11:17330992..17331016 (25 bp)
GTCTGCATAAGCACACGCATAACGC
NONE
OsAffx.7260.1.S1_at--90--5131Chr11:17331002..17331026 (25 bp)
GCACACGCATAACGCAAATCGCTAT
NONE
OsAffx.7260.1.S1_at--79--4131Chr11:17331007..17331031 (25 bp)
CGCATAACGCAAATCGCTATCTTTA
NONE
OsAffx.7260.1.S1_at--303--3051Chr11:17331018..17331042 (25 bp)
AATCGCTATCTTTATAGACCATTCG
NONE
OsAffx.7260.1.S1_at--868--3691Chr11:17331023..17331047 (25 bp)
CTATCTTTATAGACCATTCGTGCAG
NONE
Target Sequence 
TCCGTCCCTGACCTCAGGAGCAGTGGCGGGAGCGGGCAGATCCGCCGCCCCCGACTTCGGAAGTGAAGGCGATGGGCGGG
CGGCGACGGCGGCTGGATCCGGTGGCCACTCCGCCCCCTATGCGCACTGTCTGCATAAGCACACGCATAACGCAAATCGC
TATCTTTATAGACCATTCGTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis