Browse Element(s) Details


Os.56208.1.S1_at

Description gb:AK109615.1
DB_XREF= gi:32994824
TID=Os.56208.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-G12, full insert sequence.
FL= gb:AK109615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3062011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30590Os.40626.1.S1_at5/1111+17305183..17308975hAT family dimerisation domain containing protein
LOC_Os11g30590Os.40626.2.S1_x_at5/1111+17305183..17308975hAT family dimerisation domain containing protein
LOC_Os11g30600OsAffx.7259.1.S1_at11/1111+17314337..17317634hypothetical protein
LOC_Os11g30600OsAffx.31230.1.S1_at11/1111+17314337..17317634hypothetical protein
LOC_Os11g30620Os.56208.1.S1_at11/1111+17326822..17328667expressed protein
LOC_Os11g30630OsAffx.7260.1.S1_at3/1111+17330636..17331001NA
LOC_Os11g30640NANA11+17334158..17334634hypothetical protein
LOC_Os11g30650NANA11+17342303..17345516retrotransposon protein, putative, unclassified
LOC_Os11g30660OsAffx.19090.1.S1_at11/1111+17347308..17348429hypothetical protein
LOC_Os11g30670NANA11+17349527..17352024retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56208.1.S1_at--108--8251Chr11:17327394..17327418 (25 bp)
GGCACGGTAATGCTGTCCTACTCGG
LOC_Os11g30620
Os.56208.1.S1_at--549--6491Chr11:17327253..17327277 (25 bp)
GATAGCGTGGTCACCACTGCACTGT
LOC_Os11g30620
Os.56208.1.S1_at--987--5091Chr11:17327235..17327259 (25 bp)
GCACTGTCCCTCTTTGACAAGGTTA
LOC_Os11g30620
Os.56208.1.S1_at--36--1051Chr11:17327207..17327231 (25 bp)
AGGTGACGTTGCTGATTGCTGCATT
LOC_Os11g30620
Os.56208.1.S1_at--353--6931Chr11:17327177..17327201 (25 bp)
GTATGGCTGTGTTAGCTACGCACAA
LOC_Os11g30620
Os.56208.1.S1_at--993--3291Chr11:17327157..17327181 (25 bp)
CACAAAATTACTGCATCCCACTAGG
LOC_Os11g30620
Os.56208.1.S1_at--329--10191Chr11:17327132..17327156 (25 bp)
TATAGCTAGCTAACCGACGATCGAG
LOC_Os11g30620
Os.56208.1.S1_at--17--511Chr11:17327113..17327137 (25 bp)
ATCGAGGACCCGACTACGAGACTTA
LOC_Os11g30620
Os.56208.1.S1_at--845--8511Chr11:17327047..17327071 (25 bp)
TGGAACACGTCCTAGCTAGTACTAC
LOC_Os11g30620
Os.56208.1.S1_at--764--1411Chr11:17327012..17327036 (25 bp)
AGACAGCCCATCGAGATTCCTAGTA
LOC_Os11g30620
Os.56208.1.S1_at--876--8131Chr11:17326980..17327004 (25 bp)
GGAAATGTCCAATCCAACCAAAATT
LOC_Os11g30620
Target Sequence 
GGCACGGTAATGCTGTCCTACTCGGCGCTTGATGGCGGCCGTGCCTTCAGCTGGCCGGAGAAGGCCTGCCTCGTCGCCGT
CGCTTCCCTGCTCGTCGGCAACCTTAGCCAGATGGCGCTGCAGCGCCGCGCCGTCCGCACGGATAGCGTGGTCACCACTG
CACTGTCCCTCTTTGACAAGGTTAATAAGGTGACGTTGCTGATTGCTGCATTGGGTTGTATGGCTGTGTTAGCTACGCAC
AAAATTACTGCATCCCACTAGGTATAGCTAGCTAACCGACGATCGAGGACCCGACTACGAGACTTACTCCTTCCGTCCCA
AAATATAATTAAGTAGTTTCGGTTGGATGGAACACGTCCTAGCTAGTACTACGAATCTAGATAGACAGCCCATCGAGATT
CCTAGTACTAGCTAGGAAATGTCCAATCCAACCAAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis