Browse Element(s) Details


Os.56345.1.S1_at

Description gb:AK109898.1
DB_XREF= gi:32995107
TID=Os.56345.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-F05, full insert sequence.
FL= gb:AK109898.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g273509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27304OsAffx.14846.1.S1_at11/115+15788413..15795503POT family protein, expressed
LOC_Os05g27304OsAffx.4441.1.S1_at10/115+15788413..15795503POT family protein, expressed
LOC_Os05g27320OsAffx.27039.1.S1_at11/115+15795989..15802290VHS domain containing protein, expressed
LOC_Os05g27340Os.23655.1.A1_at11/115+15810616..15812343expressed protein
LOC_Os05g27350Os.56345.1.S1_at9/115+15816894..15818029hypothetical protein
LOC_Os05g27360NANA5+15830651..15831136hypothetical protein
LOC_Os05g27370OsAffx.27041.1.S1_at4/115+15840097..15840857hypothetical protein
LOC_Os05g27380OsAffx.14848.1.S1_at11/115+15841681..15842322hypothetical protein
LOC_Os05g27390NANA5+15842869..15844425hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56345.1.S1_at--1072--10191Chr05:15817340..15817364 (25 bp)
TATATATATCTGTGTCTCTCCAGCT
LOC_Os05g27350
Os.56345.1.S1_at--460--7611Chr05:15817149..15817173 (25 bp)
GGGAATACACTTCAGATTGAGAGCT
LOC_Os05g27350
Os.56345.1.S1_at--1079--10751Chr05:15817133..15817157 (25 bp)
TTGAGAGCTGATCTGACATCGGGAT
LOC_Os05g27350
Os.56345.1.S1_at--930--2091Chr05:15817118..15817142 (25 bp)
ACATCGGGATCGTGCCTACATTGTT
LOC_Os05g27350
Os.56345.1.S1_at--833--6311Chr05:15817077..15817101 (25 bp)
GATGAACGAGGTCACAACATTGTTG
LOC_Os05g27350
Os.56345.1.S1_at--997--6391Chr05:15817044..15817068 (25 bp)
GATCTGCTTCAACAATTTTGGTCTT
LOC_Os05g27350
Os.56345.1.S1_at--227--171Chr05:15817030..15817054 (25 bp)
ATTTTGGTCTTGAGATCATGTGCGA
LOC_Os05g27350
Os.56345.1.S1_at--287--891Chr05:15816928..15816952 (25 bp)
AGGCCATCATGGGAGCACAGTTCAA
LOC_Os05g27350
Os.56345.1.S1_at--1015--6751Chr05:15816909..15816933 (25 bp)
GTTCAACCGGGCCACAGAAGCAGTA
LOC_Os05g27350
Os.56345.1.S1_at--343--791Chr05:15816868..15816892 (25 bp)
ATGTGTTTCTATTTTCTTTCTGTAA
NONE
Os.56345.1.S1_at--207--651Chr05:15816804..15816828 (25 bp)
ATGCATGGCATTCATTCACCTGATC
NONE
Target Sequence 
TATATATATCTGTGTCTCTCCAGCTCAGTTCGAATTTAATGATATATATCTGTGTCTCTCCAGCTCAGTTAGAATTTAAT
GATATATATCTGTGTCTCTCCAGCTCAGTTAGAATTTAATGATTCTTGTATCAATTTGAGTTCAATGCATGATCAGTTTA
TCCAAAGACTAAACTGATAATAAAGGAAGAAGGGAATACACTTCAGATTGAGAGCTGATCTGACATCGGGATCGTGCCTA
CATTGTTGGTTTCATCAGAATTGGATGAACGAGGTCACAACATTGTTGTCTTTGTTGATCTGCTTCAACAATTTTGGTCT
TGAGATCATGTGCGATGGCGCAAGGCGAAGCAGAGACGCAAAGCATGCAATGGTTACAAAAGCTATCTATCTGTATTTCA
ACTGTGCAAATGAGGCCATCATGGGAGCACAGTTCAACCGGGCCACAGAAGCAGTAGAGAACTTACATTGAGATGTGTTT
CTATTTTCTTTCTGTAAGAAAAACATGTACAAATCATGGAGTAGGTGCAATTTTCAATGCATGGCATTCATTCACCTGAT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis