Browse Element(s) Details


Os.56356.1.S1_at

Description gb:AK109915.1
DB_XREF= gi:32995124
TID=Os.56356.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-C06, full insert sequence.
FL= gb:AK109915.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3210011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32070OsAffx.31260.1.S1_at11/1111+18397584..18398977LGC1, putative
LOC_Os11g32080OsAffx.7272.1.S1_at11/1111+18399610..18400109LGC1, putative
LOC_Os11g32090OsAffx.19114.1.S1_x_at11/1111+18402470..18403162Geranylgeranyl transferase type II beta subunit, putative
LOC_Os11g32100Os.56356.1.S1_at11/1111+18420661..18423855Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os11g32110Os.10817.3.S1_x_at11/1111+18433620..18440044Auxin response factor 2, putative, expressed
LOC_Os11g32110Os.10817.1.S1_a_at11/1111+18433620..18440044Auxin response factor 2, putative, expressed
LOC_Os11g32119NANA11+18440304..18440553NA
LOC_Os11g32130NANA11+18445802..18446089hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0045449biological_processregulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56356.1.S1_at--685--2951Chr11:18423186..18423210 (25 bp)
AAGGCCGGGCTGTCAATATCCACAT
LOC_Os11g32100
Os.56356.1.S1_at--1034--10131Chr11:18423202..18423226 (25 bp)
TATCCACATGTTCTGTGCTCGGAGG
LOC_Os11g32100
Os.56356.1.S1_at--296--8411Chr11:18423469..18423493 (25 bp)
GGCCCTGGGCTGTTGCCTGAAGAAA
LOC_Os11g32100
Os.56356.1.S1_at--271--371Chr11:18423493..18423517 (25 bp)
ATCAAGGCCGTTCTGATGCAATCCG
LOC_Os11g32100
Os.56356.1.S1_at--365--3991Chr11:18423191..18423543 (25 bp)
CGGGCTCCATACCATGATCTAGGAC
LOC_Os11g32100
Os.56356.1.S1_at--1116--10271Chr11:18423604..18423628 (25 bp)
TTTCCTGGTCATGTGGCATTTTCGA
LOC_Os11g32100
Os.56356.1.S1_at--959--10051Chr11:18423649..18423673 (25 bp)
TAGTAGTTTTAGACCTGCTCAGGGC
LOC_Os11g32100
Os.56356.1.S1_at--836--7571Chr11:18423670..18423694 (25 bp)
GGGCTTGCTGAACCAGTTTATCTTC
LOC_Os11g32100
Os.56356.1.S1_at--799--7111Chr11:18423724..18423748 (25 bp)
GTCAGTAGTCTCTTGGTGCTTTAAC
LOC_Os11g32100
Os.56356.1.S1_at--1109--8651Chr11:18423751..18423775 (25 bp)
TGTGTTTTGAAACCTTCTGCCTGTT
LOC_Os11g32100
Os.56356.1.S1_at--866--2031Chr11:18423781..18423805 (25 bp)
TACTTCCCGGTACATGTTTTCGTCT
LOC_Os11g32100
Target Sequence 
AAGGCCGGGCTGTCAATATCCACATGTTCTGTGCTCGGAGGCCCGGTCTACTGCTCTCTGCCATGAGGGCCGTCGAAGGC
CTTGGTCTCGATGTCCAGCAAGCTGTAATCAGTTGCTTCAATGGCTTTACGTTGGATATTTTTAAGGCTGAGCAATGCAA
GGACGGCCCTGGGCTGTTGCCTGAAGAAATCAAGGCCGTTCTGATGCAATCCGCCGGGCTCCATACCATGATCTAGGACA
GGAGAGCTCAATCAAACTCCAAAGGACAGAGTAGCTCAGGAATTGACAAAGTACCGGTGTTTCCTGGTCATGTGGCATTT
TCGACAGAAGGAAGTTCCTCTTTTTAGTAGTTTTAGACCTGCTCAGGGCTTGCTGAACCAGTTTATCTTCTAGTATTTAG
AGTCCCCAAAAAAAATAATGTCAGTAGTCTCTTGGTGCTTTAACATTGTGTTTTGAAACCTTCTGCCTGTTTTTTTTACT
TCCCGGTACATGTTTTCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis