Browse Element(s) Details


Os.56369.1.S1_at

Description gb:AK109933.1
DB_XREF= gi:32995142
TID=Os.56369.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56369 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-G11, full insert sequence.
FL= gb:AK109933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2378011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23760OsAffx.17865.1.S1_at11/119+14141914..14143375hypothetical protein
LOC_Os09g23770OsAffx.6378.1.S1_at10/119+14147038..14148472expressed protein
LOC_Os09g23780Os.56369.1.S1_at11/119+14152040..14153149expressed protein
LOC_Os09g23790NANA9+14169611..14175766retrotransposon protein, putative, unclassified
LOC_Os09g23800NANA9+14176383..14179649retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56369.1.S1_at--964--5551Chr09:14152370..14152394 (25 bp)
GAAAGAGGTAGGCATCTTCTTCCTC
LOC_Os09g23780
Os.56369.1.S1_at--399--10431Chr09:14152333..14152357 (25 bp)
TTACCCATGCTCACGTCACTAGAGC
LOC_Os09g23780
Os.56369.1.S1_at--217--2031Chr09:14152316..14152340 (25 bp)
ACTAGAGCTGCCACGTGACGTCATT
LOC_Os09g23780
Os.56369.1.S1_at--627--7371Chr09:14152302..14152326 (25 bp)
GTGACGTCATTCTCTAGTACTACCA
LOC_Os09g23780
Os.56369.1.S1_at--1103--10051Chr09:14152288..14152312 (25 bp)
TAGTACTACCATTGGCCCATCAACT
LOC_Os09g23780
Os.56369.1.S1_at--349--4551Chr09:14152274..14152298 (25 bp)
GCCCATCAACTTGGTGTTTAGTTTG
LOC_Os09g23780
Os.56369.1.S1_at--1034--5191Chr09:14152250..14152274 (25 bp)
GCAATTTGCATGTGCTCTACCCTCT
LOC_Os09g23780
Os.56369.1.S1_at--99--1811Chr09:14152232..14152256 (25 bp)
ACCCTCTCAATTAGGCTTAGCTGAC
LOC_Os09g23780
Os.56369.1.S1_at--1004--8291Chr09:14152219..14152243 (25 bp)
GGCTTAGCTGACAAGGATGCCTCAC
LOC_Os09g23780
Os.56369.1.S1_at--11--7991Chr09:14152205..14152229 (25 bp)
GGATGCCTCACAGTACATACGCAAT
LOC_Os09g23780
Os.56369.1.S1_at--1032--11Chr09:14152176..14152200 (25 bp)
ATTAATACCAAGCTAGACGATCTAT
LOC_Os09g23780
Target Sequence 
GAAAGAGGTAGGCATCTTCTTCCTCTCGTTACTACCCTTACCCATGCTCACGTCACTAGAGCTGCCACGTGACGTCATTC
TCTAGTACTACCATTGGCCCATCAACTTGGTGTTTAGTTTGCAATTTGCATGTGCTCTACCCTCTCAATTAGGCTTAGCT
GACAAGGATGCCTCACAGTACATACGCAATTATAATTAATACCAAGCTAGACGATCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis